RADseq approaches and applications for forest tree genetics
As tree species vary extensively in genome size, complexity, and resource development,
reduced representation methods have been increasingly employed for the generation of …
reduced representation methods have been increasingly employed for the generation of …
Complementary combination of multiplex high‐throughput DNA sequencing for molecular phylogeny
Y Suyama, SK Hirota, A Matsuo, Y Tsunamoto… - 2022 - Wiley Online Library
The rapid development of DNA sequencing technology in recent years has provided new
tools for phylogenetic data acquisition. By using high‐throughput DNA sequencing …
tools for phylogenetic data acquisition. By using high‐throughput DNA sequencing …
Long-distance benefits of marine reserves: myth or reality?
Long-distance (> 40-km) dispersal from marine reserves is poorly documented; yet, it can
provide essential benefits such as seeding fished areas or connecting marine reserves into …
provide essential benefits such as seeding fished areas or connecting marine reserves into …
Comparing the Performance of Microsatellites and RADseq in Population Genetic Studies: Analysis of Data for Pike (Esox lucius) and a Synthesis of Previous Studies
Population genetic studies reveal biodiversity patterns and inform about drivers of
evolutionary differentiation and adaptation, including gene flow, drift and selection. This can …
evolutionary differentiation and adaptation, including gene flow, drift and selection. This can …
Genomic phylogeography illuminates deep cyto-nuclear discordances in midwife toads (Alytes)
J Ambu, Í Martínez-Solano, T Suchan… - Molecular Phylogenetics …, 2023 - Elsevier
The advent of genomic methods allows us to revisit the evolutionary history of organismal
groups for which robust phylogenies are still lacking, particularly in species complexes that …
groups for which robust phylogenies are still lacking, particularly in species complexes that …
Nonrandom missing data can bias principal component analysis inference of population genetic structure
Population genetic studies in non‐model systems increasingly use next‐generation
sequencing to obtain more loci, but such methods also generate more missing data that may …
sequencing to obtain more loci, but such methods also generate more missing data that may …
Removing the bad apples: A simple bioinformatic method to improve loci‐recovery in de novo RADseq data for non‐model organisms
The restriction site‐associated DNA (RADseq) family of protocols involves digesting DNA
and sequencing the region flanking the cut site, thus providing a cost and time‐efficient way …
and sequencing the region flanking the cut site, thus providing a cost and time‐efficient way …
Population genomic analysis of mango (Mangifera indica) suggests a complex history of domestication
EJ Warschefsky, EJB von Wettberg - New Phytologist, 2019 - Wiley Online Library
Humans have domesticated diverse species from across the plant kingdom, yet much of our
foundational knowledge of domestication has come from studies investigating relatively few …
foundational knowledge of domestication has come from studies investigating relatively few …
Genotyping‐by‐sequencing illuminates high levels of divergence among sympatric forms of coregonines in the Laurentian Great Lakes
Effective resource management depends on our ability to partition diversity into biologically
meaningful units. Recent evolutionary divergence, however, can often lead to ambiguity in …
meaningful units. Recent evolutionary divergence, however, can often lead to ambiguity in …
Inferring genetic structure when there is little: population genetics versus genomics of the threatened bat Miniopterus schreibersii across Europe
Despite their paramount importance in molecular ecology and conservation, genetic
diversity and structure remain challenging to quantify with traditional genotyping methods …
diversity and structure remain challenging to quantify with traditional genotyping methods …