Histone exchange, chromatin structure and the regulation of transcription

S Venkatesh, JL Workman - Nature reviews Molecular cell biology, 2015 - nature.com
The packaging of DNA into strings of nucleosomes is one of the features that allows
eukaryotic cells to tightly regulate gene expression. The ordered disassembly of …

Liquid–liquid phase separation in chromatin

K Rippe - Cold Spring Harbor perspectives in biology, 2022 - cshperspectives.cshlp.org
In eukaryotic cells, protein and RNA factors involved in genome activities like transcription,
RNA processing, DNA replication, and repair accumulate in self-organizing membraneless …

Structural basis of nucleosome disassembly and reassembly by RNAPII elongation complex with FACT

H Ehara, T Kujirai, M Shirouzu, H Kurumizaka… - Science, 2022 - science.org
During gene transcription, RNA polymerase II (RNAPII) traverses nucleosomes in chromatin,
but the mechanism has remained elusive. Using cryo–electron microscopy, we obtained …

Recycling of modified H2A-H2B provides short-term memory of chromatin states

V Flury, N Reverón-Gómez, N Alcaraz… - Cell, 2023 - cell.com
Chromatin landscapes are disrupted during DNA replication and must be restored faithfully
to maintain genome regulation and cell identity. The histone H3-H4 modification landscape …

Cell volume change through water efflux impacts cell stiffness and stem cell fate

M Guo, AF Pegoraro, A Mao, EH Zhou… - Proceedings of the …, 2017 - National Acad Sciences
Cells alter their mechanical properties in response to their local microenvironment; this plays
a role in determining cell function and can even influence stem cell fate. Here, we identify a …

Dynamic organization of chromatin domains revealed by super-resolution live-cell imaging

T Nozaki, R Imai, M Tanbo, R Nagashima, S Tamura… - Molecular cell, 2017 - cell.com
The eukaryotic genome is organized within cells as chromatin. For proper information
output, higher-order chromatin structures can be regulated dynamically. How such structures …

[HTML][HTML] Structure of a backtracked hexasomal intermediate of nucleosome transcription

L Farnung, M Ochmann, G Garg, SM Vos, P Cramer - Molecular Cell, 2022 - cell.com
During gene transcription, RNA polymerase II (RNA Pol II) passes nucleosomes with the
help of various elongation factors. Here, we show that RNA Pol II achieves efficient …

SIRT7 is a histone desuccinylase that functionally links to chromatin compaction and genome stability

L Li, L Shi, S Yang, R Yan, D Zhang, J Yang… - Nature …, 2016 - nature.com
Although SIRT7 is a member of sirtuin family proteins that are described as NAD+-
dependent class III histone deacetylases, the intrinsic enzymatic activity of this sirtuin protein …

Transcription in living cells: molecular mechanisms of bursting

J Rodriguez, DR Larson - Annual review of biochemistry, 2020 - annualreviews.org
Transcription in several organisms from certain bacteria to humans has been observed to be
stochastic in nature: toggling between active and inactive states. Periods of active nascent …

Pioneer transcription factors, chromatin dynamics, and cell fate control

KS Zaret, SE Mango - Current opinion in genetics & development, 2016 - Elsevier
Among the diverse transcription factors that are necessary to elicit changes in cell fate, both
in embryonic development and in cellular reprogramming, a subset of factors are capable of …