Giant virus biology and diversity in the era of genome-resolved metagenomics

F Schulz, C Abergel, T Woyke - Nature Reviews Microbiology, 2022 - nature.com
The discovery of giant viruses, with capsids as large as some bacteria, megabase-range
genomes and a variety of traits typically found only in cellular organisms, was one of the …

The landscape of lysogeny across microbial community density, diversity and energetics

CB Silveira, A Luque, F Rohwer - Environmental microbiology, 2021 - Wiley Online Library
Lysogens are common at high bacterial densities, an observation that contrasts with the
prevailing view of lysogeny as a low‐density refugium strategy. Here, we review the …

Viruses under the Antarctic Ice Shelf are active and potentially involved in global nutrient cycles

J Lopez-Simon, M Vila-Nistal, A Rosenova… - Nature …, 2023 - nature.com
Viruses play an important role in the marine ecosystem. However, our comprehension of
viruses inhabiting the dark ocean, and in particular, under the Antarctic Ice Shelves, remains …

Integrating viral metagenomics into an ecological framework

P Sommers, A Chatterjee, A Varsani… - Annual review of …, 2021 - annualreviews.org
Viral metagenomics has expanded our knowledge of the ecology of uncultured viruses,
within both environmental (eg, terrestrial and aquatic) and host-associated (eg, plants and …

Targeted whole-genome recovery of single viral species in a complex environmental sample

L Chen, A Chen, XD Zhang, MT Saenz Robles… - Proceedings of the …, 2024 - pnas.org
Characterizing unknown viruses is essential for understanding viral ecology and preparing
against viral outbreaks. Recovering complete genome sequences from environmental …

[HTML][HTML] Soil keystone viruses are regulators of ecosystem multifunctionality

P Jia, JL Liang, J Lu, S Zhong, T Xiong, S Feng… - Environment …, 2024 - Elsevier
Ecosystem multifunctionality reflects the capacity of ecosystems to simultaneously maintain
multiple functions which are essential bases for human sustainable development. Whereas …

Droplet microfluidics for high-resolution virology

W Jing, HS Han - 2022 - ACS Publications
Microfluidics has enabled a new era of cellular and molecular assays due to the small length
scales, parallelization, and the modularity of various analysis and actuation functions …

Metagenomic airborne resistome from urban hot spots through the One Health lens

L Maestre‐Carballa, V Navarro‐López… - Environmental …, 2024 - Wiley Online Library
Human activities are a significant contributor to the spread of antibiotic resistance genes
(ARGs), which pose a serious threat to human health. These ARGs can be transmitted …

Embracing Complexity: What Novel Sequencing Methods Are Teaching Us About Herpesvirus Genomic Diversity

A Ortigas-Vasquez, M Szpara - Annual Review of Virology, 2024 - annualreviews.org
The arrival of novel sequencing technologies throughout the past two decades has led to a
paradigm shift in our understanding of herpesvirus genomic diversity. Previously …

[HTML][HTML] Time Series Data Provide Insights into the Evolution and Abundance of One of the Most Abundant Viruses in the Marine Virosphere: The Uncultured …

M Vila-Nistal, R Logares, JM Gasol… - …, 2024 - pmc.ncbi.nlm.nih.gov
Viruses play a pivotal role in ecosystems by influencing biochemical cycles and impacting
the structure and evolution of their host cells. The widespread pelagiphages infect …