Water dynamics in the hydration shells of biomolecules

D Laage, T Elsaesser, JT Hynes - Chemical Reviews, 2017 - ACS Publications
The structure and function of biomolecules are strongly influenced by their hydration shells.
Structural fluctuations and molecular excitations of hydrating water molecules cover a broad …

Understanding hydrophobic effects: Insights from water density fluctuations

NB Rego, AJ Patel - Annual Review of Condensed Matter …, 2022 - annualreviews.org
The aversion of hydrophobic solutes for water drives diverse interactions and assemblies
across materials science, biology, and beyond. Here, we review the theoretical …

Water is an active matrix of life for cell and molecular biology

P Ball - Proceedings of the National Academy of Sciences, 2017 - National Acad Sciences
Szent-Győrgi called water the “matrix of life” and claimed that there was no life without it.
This statement is true, as far as we know, on our planet, but it is not clear whether it must …

HullRad: fast calculations of folded and disordered protein and nucleic acid hydrodynamic properties

PJ Fleming, KG Fleming - Biophysical journal, 2018 - cell.com
Hydrodynamic properties are useful parameters for estimating the size and shape of
proteins and nucleic acids in solution. The calculation of such properties from structural …

Water in protein hydration and ligand recognition

M Maurer, C Oostenbrink - Journal of Molecular Recognition, 2019 - Wiley Online Library
This review describes selected basics of water in biomolecular recognition. We focus on a
qualitative understanding of the most important physical aspects, how these change in …

Structural and dynamical properties of liquids in confinements: A review of molecular dynamics simulation studies

R Horstmann, L Hecht, S Kloth, M Vogel - Langmuir, 2022 - ACS Publications
Molecular dynamics (MD) simulations are a powerful tool for detailed studies of altered
properties of liquids in confinement, in particular, of changed structures and dynamics. They …

Dynamical disorder in the DNA hydration shell

E Duboué-Dijon, AC Fogarty, JT Hynes… - Journal of the American …, 2016 - ACS Publications
The reorientation and hydrogen-bond dynamics of water molecules within the hydration
shell of a B-DNA dodecamer, which are of interest for many of its biochemical functions, are …

Solvent effects on the self-assembly of an amphiphilic polypeptide incorporating α-helical hydrophobic blocks

A Nandakumar, Y Ito, M Ueda - Journal of the American Chemical …, 2020 - ACS Publications
The self-assembly of biological molecules is an important pathway to understanding the
molecular basis of complex metabolic events. The presence of a cosolvent in an aqueous …

Dielectric properties of water in charged nanopores

TR Underwood, IC Bourg - The Journal of Physical Chemistry B, 2022 - ACS Publications
In this study, we examine the spectral dielectric properties of liquid water in charged
nanopores over a wide range of frequencies (0.3 GHz to 30 THz) and pore widths (0.3 to 5 …

Dielectric ordering of water molecules arranged in a dipolar lattice

MA Belyanchikov, M Savinov, ZV Bedran… - Nature …, 2020 - nature.com
Intermolecular hydrogen bonds impede long-range (anti-) ferroelectric order of water. We
confine H2O molecules in nanosized cages formed by ions of a dielectric crystal. Arranging …