Immune responses in influenza A virus and human coronavirus infections: an ongoing battle between the virus and host

J Zheng, S Perlman - Current opinion in virology, 2018 - Elsevier
Highlights•Host immune responses play both protective and pathogenic roles in IAV and
CoV infections.•Synergy of adaptive and innate immunity is required for efficient control of …

Collective behavior and self-organization in neural rosette morphogenesis

M Miotto, M Rosito, M Paoluzzi, V de Turris… - Frontiers in Cell and …, 2023 - frontiersin.org
Neural rosettes develop from the self-organization of differentiating human pluripotent stem
cells. This process mimics the emergence of the embryonic central nervous system …

Neutrophils-related host factors associated with severe disease and fatality in patients with influenza infection

BM Tang, M Shojaei, S Teoh, A Meyers, J Ho… - Nature …, 2019 - nature.com
Severe influenza infection has no effective treatment available. One of the key barriers to
developing host-directed therapy is a lack of reliable prognostic factors needed to guide …

Prediction of time series gene expression and structural analysis of gene regulatory networks using recurrent neural networks

M Monti, J Fiorentino, E Milanetti, G Gosti, GG Tartaglia - Entropy, 2022 - mdpi.com
Methods for time series prediction and classification of gene regulatory networks (GRNs)
from gene expression data have been treated separately so far. The recent emergence of …

Systems biology approaches for therapeutics development against COVID-19

S Jaiswal, M Kumar, Mandeep, Sunita… - Frontiers in Cellular …, 2020 - frontiersin.org
Understanding the systems biology approaches for promoting the development of new
therapeutic drugs is attaining importance nowadays. The threat of COVID-19 outbreak …

Immunomics: a 21st century approach to vaccine development for complex pathogens

KP De Sousa, DL Doolan - Parasitology, 2016 - cambridge.org
Immunomics is a relatively new field of research which integrates the disciplines of
immunology, genomics, proteomics, transcriptomics and bioinformatics to characterize the …

[HTML][HTML] Systems biology and systems genetics—novel innovative approaches to study host–pathogen interactions during influenza infection

H Kollmus, E Wilk, K Schughart - Current opinion in virology, 2014 - Elsevier
Highlights•Large scale omics have created the basis for influenza systems biology.•Systems
genetics makes an important contribution to systems biology.•Experimental animal models …

Big data offers novel insights for oncolytic virus immunotherapy

SL Swift, DF Stojdl - Viruses, 2016 - mdpi.com
Large-scale assays, such as microarrays, next-generation sequencing and various “omics”
technologies, have explored multiple aspects of the immune response following virus …

Identifying miRNA-mediated signaling subpathways by integrating paired miRNA/mRNA expression data with pathway topology

AG Vrahatis, GN Dimitrakopoulos… - 2015 37th Annual …, 2015 - ieeexplore.ieee.org
In the road for network medicine the newly emerged systems-level subpathway-based
analysis methods offer new disease genes, drug targets and network-based biomarkers. In …

XGRN: reconstruction of biological networks based on boosted trees regression

GN Dimitrakopoulos - Computation, 2021 - mdpi.com
In Systems Biology, the complex relationships between different entities in the cells are
modeled and analyzed using networks. Towards this aim, a rich variety of gene regulatory …