[HTML][HTML] An overview of bioinformatics tools for epitope prediction: implications on vaccine development

RE Soria-Guerra, R Nieto-Gomez… - Journal of biomedical …, 2015 - Elsevier
Exploitation of recombinant DNA and sequencing technologies has led to a new concept in
vaccination in which isolated epitopes, capable of stimulating a specific immune response …

HIV latency

RF Siliciano, WC Greene - Cold Spring …, 2011 - perspectivesinmedicine.cshlp.org
HIV-1 can establish a state of latent infection at the level of individual T cells. Latently
infected cells are rare in vivo and appear to arise when activated CD4+ T cells, the major …

Escape of SARS-CoV-2 501Y. V2 from neutralization by convalescent plasma

S Cele, I Gazy, L Jackson, SH Hwa, H Tegally, G Lustig… - Nature, 2021 - nature.com
SARS-CoV-2 variants of concern (VOC) have arisen independently at multiple locations,
and may reduce the efficacy of current vaccines that target the spike glycoprotein of SARS …

Preclinical characterization of an intravenous coronavirus 3CL protease inhibitor for the potential treatment of COVID19

B Boras, RM Jones, BJ Anson, D Arenson… - Nature …, 2021 - nature.com
COVID-19 caused by the SARS-CoV-2 virus has become a global pandemic. 3CL protease
is a virally encoded protein that is essential across a broad spectrum of coronaviruses with …

Clonally expanded HIV-1 proviruses with 5′-leader defects can give rise to nonsuppressible residual viremia

JA White, F Wu, S Yasin… - The Journal of …, 2023 - Am Soc Clin Investig
Background Antiretroviral therapy (ART) halts HIV-1 replication, decreasing viremia to below
the detection limit of clinical assays. However, some individuals experience persistent …

A quantitative model used to compare within-host SARS-CoV-2, MERS-CoV, and SARS-CoV dynamics provides insights into the pathogenesis and treatment of SARS …

KS Kim, K Ejima, S Iwanami, Y Fujita, H Ohashi… - PLoS …, 2021 - journals.plos.org
The scientific community is focused on developing antiviral therapies to mitigate the impacts
of the ongoing novel coronavirus disease 2019 (COVID-19) outbreak. This will be facilitated …

Metrics other than potency reveal systematic variation in responses to cancer drugs

M Fallahi-Sichani, S Honarnejad, LM Heiser… - Nature chemical …, 2013 - nature.com
Large-scale analysis of cellular response to anticancer drugs typically focuses on variation
in potency (half-maximum inhibitory concentration,(IC50)), assuming that it is the most …

Modeling the within-host dynamics of HIV infection

AS Perelson, RM Ribeiro - BMC biology, 2013 - Springer
The new field of viral dynamics, based on within-host modeling of viral infections, began with
models of human immunodeficiency virus (HIV), but now includes many viral infections …

Safety and efficacy of raltegravir-based versus efavirenz-based combination therapy in treatment-naive patients with HIV-1 infection: a multicentre, double-blind …

JL Lennox, E DeJesus, A Lazzarin, RB Pollard… - The Lancet, 2009 - thelancet.com
Background Use of raltegravir with optimum background therapy is effective and well
tolerated in treatment-experienced patients with multidrug-resistant HIV-1 infection. We …

In vivo dynamics of the latent reservoir for HIV-1: new insights and implications for cure

JD Siliciano, RF Siliciano - Annual Review of Pathology …, 2022 - annualreviews.org
Although antiretroviral therapy (ART) can reduce viremia to below the limit of detection and
allow persons living with HIV-1 (PLWH) to lead relatively normal lives, viremia rebounds …