Native ion mobility-mass spectrometry and related methods in structural biology

A Konijnenberg, A Butterer, F Sobott - Biochimica et Biophysica Acta (BBA) …, 2013 - Elsevier
Mass spectrometry-based methods have become increasingly important in structural biology—
in particular for large and dynamic, even heterogeneous assemblies of biomolecules. Native …

Native top‐down mass spectrometry for higher‐order structural characterization of proteins and complexes

R Liu, S Xia, H Li - Mass spectrometry reviews, 2023 - Wiley Online Library
Progress in structural biology research has led to a high demand for powerful and yet
complementary analytical tools for structural characterization of proteins and protein …

Structural and dynamics analysis of intrinsically disordered proteins by high-speed atomic force microscopy

N Kodera, D Noshiro, SK Dora, T Mori, J Habchi… - Nature …, 2021 - nature.com
Intrinsically disordered proteins (IDPs) are ubiquitous proteins that are disordered entirely or
partly and play important roles in diverse biological phenomena. Their structure dynamically …

The inverted free energy landscape of an intrinsically disordered peptide by simulations and experiments

D Granata, F Baftizadeh, J Habchi, C Galvagnion… - Scientific reports, 2015 - nature.com
The free energy landscape theory has been very successful in rationalizing the folding
behaviour of globular proteins, as this representation provides intuitive information on the …

CIUSuite: a quantitative analysis package for collision induced unfolding measurements of gas-phase protein ions

JD Eschweiler, JN Rabuck-Gibbons, Y Tian… - Analytical …, 2015 - ACS Publications
Ion mobility-mass spectrometry (IM-MS) is a technology of growing importance for structural
biology, providing complementary 3D structure information for biomolecules within samples …

Charge-surface correlation in electrospray ionization of folded and unfolded proteins

L Testa, S Brocca, R Grandori - Analytical chemistry, 2011 - ACS Publications
Electrospray-ionization mass spectrometry (ESI-MS) is widely used for protein studies. It has
been shown that the extent of protein ionization under nondenaturing conditions correlates …

Machine learning subtle conformational change due to phosphorylation in intrinsically disordered proteins

S Adhikari, J Mondal - The Journal of Physical Chemistry B, 2023 - ACS Publications
Phosphorylation of intrinsically disordered proteins/regions (IDPs/IDRs) has a profound
effect in biological functions such as cell signaling, protein folding or unfolding, and long …

Conformational effects in protein electrospray‐ionization mass spectrometry

J Li, C Santambrogio, S Brocca… - Mass Spectrometry …, 2016 - Wiley Online Library
Electrospray‐ionization mass spectrometry (ESI‐MS) is a key tool of structural biology,
complementing the information delivered by conventional biochemical and biophysical …

Single molecule study of the intrinsically disordered FG-repeat nucleoporin 153

S Milles, EA Lemke - Biophysical journal, 2011 - cell.com
Nucleoporins (Nups), which are intrinsically disordered, form a selectivity filter inside the
nuclear pore complex, taking a central role in the vital nucleocytoplasmic transport …

Mass spectrometry‐based methods to study protein architecture and dynamics

IA Kaltashov, CE Bobst, RR Abzalimov - Protein Science, 2013 - Wiley Online Library
Mass spectrometry is now an indispensable tool in the armamentarium of molecular
biophysics, where it is used for tasks ranging from protein sequencing and mapping of post …