Genomics and breeding innovations for enhancing genetic gain for climate resilience and nutrition traits

P Sinha, VK Singh, A Bohra, A Kumar, JC Reif… - Theoretical and Applied …, 2021 - Springer
Key message Integrating genomics technologies and breeding methods to tweak core
parameters of the breeder's equation could accelerate delivery of climate-resilient and …

Optimizing plant breeding programs for genomic selection

LF Merrick, AW Herr, KS Sandhu, DN Lozada… - Agronomy, 2022 - mdpi.com
Plant geneticists and breeders have used marker technology since the 1980s in quantitative
trait locus (QTL) identification. Marker-assisted selection is effective for large-effect QTL but …

Optimizing genomic-enabled prediction in small-scale maize hybrid breeding programs: a roadmap review

R Fritsche-Neto, G Galli, KLR Borges… - Frontiers in Plant …, 2021 - frontiersin.org
The usefulness of genomic prediction (GP) for many animal and plant breeding programs
has been highlighted for many studies in the last 20 years. In maize breeding programs …

Genome and environment based prediction models and methods of complex traits incorporating genotype× environment interaction

J Crossa, OA Montesinos-Lopez… - Genomic Prediction of …, 2022 - Springer
Genomic-enabled prediction models are of paramount importance for the successful
implementation of genomic selection (GS) based on breeding values. As opposed to animal …

A guide for kernel generalized regression methods for genomic-enabled prediction

A Montesinos-López, OA Montesinos-López… - Heredity, 2021 - nature.com
The primary objective of this paper is to provide a guide on implementing Bayesian
generalized kernel regression methods for genomic prediction in the statistical software R …

On the equivalence between marker effect models and breeding value models and direct genomic values with the Algorithm for Proven and Young

M Bermann, D Lourenco, NS Forneris… - Genetics Selection …, 2022 - Springer
Background Single-step genomic predictions obtained from a breeding value model require
calculating the inverse of the genomic relationship matrix (G-1). The Algorithm for Proven …

Genome-wide association mapping reveals novel putative gene candidates governing reproductive stage heat stress tolerance in rice

KT Ravikiran, S Gopala Krishnan, KP Abhijith… - Frontiers in …, 2022 - frontiersin.org
Temperature rise predicted for the future will severely affect rice productivity because the
crop is highly sensitive to heat stress at the reproductive stage. Breeding tolerant varieties is …

Deep kernel learning improves molecular fingerprint prediction from tandem mass spectra

K Dührkop - Bioinformatics, 2022 - academic.oup.com
Motivation Untargeted metabolomics experiments rely on spectral libraries for structure
annotation, but these libraries are vastly incomplete; in silico methods search in structure …

Comparing artificial‐intelligence techniques with state‐of‐the‐art parametric prediction models for predicting soybean traits

S Ray, D Jarquin, R Howard - The Plant Genome, 2023 - Wiley Online Library
Abstract Soybean [Glycine max (L.) Merr.] is a significant source of protein and oil and is also
widely used as animal feed. Thus, developing lines that are superior in terms of yield …

Generalizable approaches for genomic prediction of metabolites in plants

LJ Brzozowski, MT Campbell, H Hu, M Caffe… - The Plant …, 2022 - Wiley Online Library
Plant metabolites are important traits for plant breeders seeking to improve nutrition and
agronomic performance yet integrating selection for metabolomic traits can be limited by …