Partial differential equations and stochastic methods in molecular dynamics

T Lelievre, G Stoltz - Acta Numerica, 2016 - cambridge.org
The objective of molecular dynamics computations is to infer macroscopic properties of
matter from atomistic models via averages with respect to probability measures dictated by …

Interacting Langevin diffusions: Gradient structure and ensemble Kalman sampler

A Garbuno-Inigo, F Hoffmann, W Li, AM Stuart - SIAM Journal on Applied …, 2020 - SIAM
Solving inverse problems without the use of derivatives or adjoints of the forward model is
highly desirable in many applications arising in science and engineering. In this paper we …

The zig-zag process and super-efficient sampling for Bayesian analysis of big data

J Bierkens, P Fearnhead, G Roberts - 2019 - projecteuclid.org
The Zig-Zag process and super-efficient sampling for Bayesian analysis of big data Page 1 The
Annals of Statistics 2019, Vol. 47, No. 3, 1288–1320 https://doi.org/10.1214/18-AOS1715 © …

Measuring sample quality with Stein's method

J Gorham, L Mackey - Advances in neural information …, 2015 - proceedings.neurips.cc
To improve the efficiency of Monte Carlo estimation, practitioners are turning to biased
Markov chain Monte Carlo procedures that trade off asymptotic exactness for computational …

Finite-data error bounds for Koopman-based prediction and control

F Nüske, S Peitz, F Philipp, M Schaller… - Journal of Nonlinear …, 2023 - Springer
The Koopman operator has become an essential tool for data-driven approximation of
dynamical (control) systems, eg, via extended dynamic mode decomposition. Despite its …

Thermodynamic bounds on correlation times

A Dechant, J Garnier-Brun, S Sasa - Physical Review Letters, 2023 - APS
We derive a variational expression for the correlation time of physical observables in steady-
state diffusive systems. As a consequence of this variational expression, we obtain lower …

Profiling pareto front with multi-objective stein variational gradient descent

X Liu, X Tong, Q Liu - Advances in Neural Information …, 2021 - proceedings.neurips.cc
Finding diverse and representative Pareto solutions from the Pareto front is a key challenge
in multi-objective optimization (MOO). In this work, we propose a novel gradient-based …

Sampling efficiency of transverse forces in dense liquids

F Ghimenti, L Berthier, G Szamel, F van Wijland - Physical Review Letters, 2023 - APS
Sampling the Boltzmann distribution using forces that violate detailed balance can be faster
than with the equilibrium evolution, but the acceleration depends on the nature of the …

Measuring sample quality with diffusions

J Gorham, AB Duncan, SJ Vollmer, L Mackey - The Annals of Applied …, 2019 - JSTOR
Stein's method for measuring convergence to a continuous target distribution relies on an
operator characterizing the target and Stein factor bounds on the solutions of an associated …

Ergodicity of the zigzag process

J Bierkens, GO Roberts, PA Zitt - The Annals of Applied Probability, 2019 - JSTOR
The zigzag process is a piecewise deterministic Markov process which can be used in
aMCMC framework to sample from a given target distribution. We prove the convergence of …