Bioinformatics for marine products: An overview of resources, bottlenecks, and perspectives

L Ambrosino, M Tangherlini, C Colantuono, A Esposito… - Marine drugs, 2019 - mdpi.com
The sea represents a major source of biodiversity. It exhibits many different ecosystems in a
huge variety of environmental conditions where marine organisms have evolved with …

Bioinformatics resources for plant abiotic stress responses: state of the art and opportunities in the fast evolving-omics era

L Ambrosino, C Colantuono, G Diretto, A Fiore… - Plants, 2020 - mdpi.com
Abiotic stresses are among the principal limiting factors for productivity in agriculture. In the
current era of continuous climate changes, the understanding of the molecular aspects …

Gene expression during the formation of resting spores induced by nitrogen starvation in the marine diatom Chaetoceros socialis

A Pelusi, L Ambrosino, M Miralto, ML Chiusano… - BMC genomics, 2023 - Springer
Background Dormancy is widespread in both multicellular and unicellular organisms.
Among diatoms, unicellular microalgae at the base of all aquatic food webs, several species …

Insights into the genome structure of four acetogenic bacteria with specific reference to the Wood–Ljungdahl pathway

A Esposito, S Tamburini, L Triboli… - …, 2019 - Wiley Online Library
Acetogenic bacteria are obligate anaerobes with the ability of converting carbon dioxide and
other one‐carbon substrates into acetate through the Wood–Ljungdahl (WL) pathway …

[HTML][HTML] Comparative Transcriptomics to Identify RNA Writers and Erasers in Microalgae

L Ambrosino, A Riccardi, MS Welling… - International Journal of …, 2024 - mdpi.com
Epitranscriptomics is considered as a new regulatory step in eukaryotes for developmental
processes and stress responses. The aim of this study was, for the first time, to identify RNA …

[HTML][HTML] The zebrafish retina and the evolution of the Onecut-mediated pathway in cell type differentiation

QA Vassalli, G Fasano, V Nittoli, E Gagliardi, RM Sepe… - Cells, 2024 - mdpi.com
Onecut/Hnf6 (Oc) genes play an important role in the proper formation of retinal cells in
vertebrates, in particular horizontal, retinal ganglion and amacrine cells. However, it is not …

m6A RNA Methylation in Marine Plants: First Insights and Relevance for Biological Rhythms

M Ruocco, L Ambrosino, M Jahnke… - International Journal of …, 2020 - mdpi.com
Circadian regulations are essential for enabling organisms to synchronize physiology with
environmental light-dark cycles. Post-transcriptional RNA modifications still represent an …

Onecut regulates core components of the molecular machinery for neurotransmission in photoreceptor differentiation

QA Vassalli, C Colantuono, V Nittoli… - Frontiers in Cell and …, 2021 - frontiersin.org
Photoreceptor cells (PRC) are neurons highly specialized for sensing light stimuli and have
considerably diversified during evolution. The genetic mechanisms that underlie …

Evolutionary analysis of globin domains from kinetoplastids

A Mitra, K Acharya, A Bhattacharya - Archives of Microbiology, 2022 - Springer
Globin (Gb) domains function in sensing gaseous ligands like oxygen and nitric oxide. In
recent years, Gb domain containing heme binding adenylate cyclases (OsAC or GbAC) …

The ams proteins and the amylovoran biosynthetic pathway: an extensive bioinformatic study

L Carlini, A Esposito, L Ambrosino, S Bharti… - Journal of Plant …, 2023 - Springer
The genus Erwinia includes plant-pathogenic, non-pathogenic and even opportunistic
human pathogens. Among them, Erwinia amylovora is one of the most studied species, as …