Deep learning techniques with genomic data in cancer prognosis: A comprehensive review of the 2021–2023 literature

M Lee - Biology, 2023 - mdpi.com
Simple Summary The ongoing advancements in deep learning, notably its use in predicting
cancer survival through genomic data analysis, calls for an up-to-date review. This paper …

A survey on gene expression data analysis using deep learning methods for cancer diagnosis

U Ravindran, C Gunavathi - Progress in Biophysics and Molecular Biology, 2023 - Elsevier
Abstract Gene Expression Data is the biological data to extract meaningful hidden
information from the gene dataset. This gene information is used for disease diagnosis …

A multimodal graph neural network framework for cancer molecular subtype classification

B Li, S Nabavi - BMC bioinformatics, 2024 - Springer
Background The recent development of high-throughput sequencing has created a large
collection of multi-omics data, which enables researchers to better investigate cancer …

[HTML][HTML] Integrative network fusion: a multi-omics approach in molecular profiling

M Chierici, N Bussola, A Marcolini… - Frontiers in …, 2020 - frontiersin.org
Recent technological advances and international efforts, such as The Cancer Genome Atlas
(TCGA), have made available several pan-cancer datasets encompassing multiple omics …

Global and cross-modal feature aggregation for multi-omics data classification and application on drug response prediction

X Zheng, M Wang, K Huang, E Zhu - Information Fusion, 2024 - Elsevier
With rapid development of single-cell multi-modal sequencing technologies, more and more
multi-omics data come into being and provide a unique opportunity for the identification of …

Multi-view spectral clustering via common structure maximization of local and global representations

W Hao, S Pang, Z Chen - Neural Networks, 2021 - Elsevier
The essential problem of multi-view spectral clustering is to learn a good common
representation by effectively utilizing multi-view information. A popular strategy for improving …

View-aware collaborative learning for survival prediction and subgroup identification

C Liu, S Wu, D Jiang, Z Yu… - IEEE Transactions on …, 2022 - ieeexplore.ieee.org
Advances of high throughput experimental methods have led to the availability of more
diverse omic datasets in clinical analysis applications. Different types of omic data reveal …

Attention-based GCN integrates multi-omics data for breast cancer subtype classification and patient-specific gene marker identification

H Guo, X Lv, Y Li, M Li - Briefings in Functional Genomics, 2023 - academic.oup.com
Breast cancer is a heterogeneous disease and can be divided into several subtypes with
unique prognostic and molecular characteristics. The classification of breast cancer …

[HTML][HTML] MultiGATAE: a novel cancer subtype identification method based on multi-omics and attention mechanism

G Zhang, Z Peng, C Yan, J Wang, J Luo, H Luo - Frontiers in Genetics, 2022 - frontiersin.org
Cancer is one of the leading causes of death worldwide, which brings an urgent need for its
effective treatment. However, cancer is highly heterogeneous, meaning that one cancer can …

aWCluster: A novel integrative network-based clustering of multiomics for subtype analysis of cancer data

M Pouryahya, JH Oh, P Javanmard… - … ACM transactions on …, 2020 - ieeexplore.ieee.org
The remarkable growth of multi-platform genomic profiles has led to the challenge of
multiomics data integration. In this study, we present a novel network-based multiomics …