The emerging landscape of spatial profiling technologies

JR Moffitt, E Lundberg, H Heyn - Nature Reviews Genetics, 2022 - nature.com
Improved scale, multiplexing and resolution are establishing spatial nucleic acid and protein
profiling methods as a major pillar for cellular atlas building of complex samples, from …

From whole-mount to single-cell spatial assessment of gene expression in 3D

LN Waylen, HT Nim, LG Martelotto… - Communications …, 2020 - nature.com
Unravelling spatio-temporal patterns of gene expression is crucial to understanding core
biological principles from embryogenesis to disease. Here we review emerging …

Spatial transcriptomics of planktonic and sessile bacterial populations at single-cell resolution

D Dar, N Dar, L Cai, DK Newman - Science, 2021 - science.org
INTRODUCTION Microbial populations display heterogeneous gene expression profiles that
result in phenotypic differences between individual bacteria. This diversity can allow …

[HTML][HTML] Dynamics and spatial genomics of the nascent transcriptome by intron seqFISH

S Shah, Y Takei, W Zhou, E Lubeck, J Yun, CHL Eng… - Cell, 2018 - cell.com
Visualization of the transcriptome and the nuclear organization in situ has been challenging
for single-cell analysis. Here, we demonstrate a multiplexed single-molecule in situ method …

Reactivation of the pluripotency program precedes formation of the cranial neural crest

A Zalc, R Sinha, GS Gulati, DJ Wesche, P Daszczuk… - Science, 2021 - science.org
INTRODUCTION Cell differentiation is classically described as a unidirectional process that
progresses through a series of lineage restriction events, with cellular potential being …

Maintenance of pluripotency-like signature in the entire ectoderm leads to neural crest stem cell potential

C Pajanoja, J Hsin, B Olinger, A Schiffmacher… - Nature …, 2023 - nature.com
The ability of the pluripotent epiblast to contribute progeny to all three germ layers is thought
to be lost after gastrulation. The later-forming neural crest (NC) rises from ectoderm and it …

Mesenchymal condensation in tooth development and regeneration: a focus on translational aspects of organogenesis

BD Sui, CX Zheng, WM Zhao, K Xuan… - Physiological …, 2023 - journals.physiology.org
The teeth are vertebrate-specific, highly specialized organs performing fundamental
functions of mastication and speech, the maintenance of which is crucial for orofacial …

IGF2BP1 induces neuroblastoma via a druggable feedforward loop with MYCN promoting 17q oncogene expression

S Hagemann, D Misiak, JL Bell, T Fuchs, MI Lederer… - Molecular Cancer, 2023 - Springer
Background Neuroblastoma is the most common solid tumor in infants accounting for
approximately 15% of all cancer-related deaths. Over 50% of high-risk neuroblastoma …

Cell segmentation-free inference of cell types from in situ transcriptomics data

J Park, W Choi, S Tiesmeyer, B Long, LE Borm… - Nature …, 2021 - nature.com
Multiplexed fluorescence in situ hybridization techniques have enabled cell-type
identification, linking transcriptional heterogeneity with spatial heterogeneity of cells …

The issue of the multipotency of the neural crest cells

E Dupin, GW Calloni, JM Coelho-Aguiar… - Developmental …, 2018 - Elsevier
In the neural primordium of vertebrate embryos, the neural crest (NC) displays a unique
character: the capacity of its component cells to leave the neural primordium, migrate along …