Nonequilibrium physics in biology

X Fang, K Kruse, T Lu, J Wang - Reviews of Modern Physics, 2019 - APS
Life is characterized by a myriad of complex dynamic processes allowing organisms to grow,
reproduce, and evolve. Physical approaches for describing systems out of thermodynamic …

Frenesy: Time-symmetric dynamical activity in nonequilibria

C Maes - Physics Reports, 2020 - Elsevier
We review the concept of dynamical ensembles in nonequilibrium statistical mechanics as
specified from an action functional or Lagrangian on spacetime. There, under local detailed …

[图书][B] Stochastic processes in cell biology

PC Bressloff - 2014 - Springer
One of the major challenges in modern biology is to understand how the molecular
components of a living cell operate in a highly noisy environment. What are the specific …

Topology of the landscape and dominant kinetic path for the thermodynamic phase transition of the charged Gauss-Bonnet-AdS black holes

R Li, C Liu, K Zhang, J Wang - Physical Review D, 2023 - APS
We study the generalized free energy of the five dimensional charged Gauss-Bonnet anti–
de Sitter (AdS) black holes in the grand canonical ensemble by treating the black hole …

Generalized free energy and dynamical state transition of the dyonic AdS black hole in the grand canonical ensemble

C Liu, R Li, K Zhang, J Wang - Journal of High Energy Physics, 2023 - Springer
A bstract We study the generalized free energy of the dyonic AdS black hole in an ensemble
with varying electric charge q E and fixed magnetic charge q M. When we adjust the …

Ring-polymer instanton theory

JO Richardson - International reviews in physical chemistry, 2018 - Taylor & Francis
Instanton theory provides a simple description of a quantum tunnelling process in terms of
an optimal tunnelling pathway. The theory is rigorously based on quantum mechanics …

Heterogeneity even at the speed limit of folding: large-scale molecular dynamics study of a fast-folding variant of the villin headpiece

DL Ensign, PM Kasson, VS Pande - Journal of molecular biology, 2007 - Elsevier
We have performed molecular dynamics simulations on a set of nine unfolded
conformations of the fastest-folding protein yet discovered, a variant of the villin headpiece …

Atomistic molecular simulations of protein folding

RB Best - Current opinion in structural biology, 2012 - Elsevier
Theory and experiment have provided answers to many of the fundamental questions of
protein folding; a remaining challenge is an accurate, high-resolution picture of folding …

Perspective: Ring-polymer instanton theory

JO Richardson - The Journal of chemical physics, 2018 - pubs.aip.org
Since the earliest explorations of quantum mechanics, it has been a topic of great interest
that quantum tunneling allows particles to penetrate classically insurmountable barriers …

Perspective: Mechanochemistry of biological and synthetic molecules

DE Makarov - The Journal of chemical physics, 2016 - pubs.aip.org
Coupling of mechanical forces and chemical transformations is central to the biophysics of
molecular machines, polymer chemistry, fracture mechanics, tribology, and other disciplines …