Control of DNA replication timing in the 3D genome

C Marchal, J Sima, DM Gilbert - Nature Reviews Molecular Cell Biology, 2019 - nature.com
The 3D organization of mammalian chromatin was described more than 30 years ago by
visualizing sites of DNA synthesis at different times during the S phase of the cell cycle …

Mammalian ceramide synthases

M Levy, AH Futerman - IUBMB life, 2010 - Wiley Online Library
In mammals, ceramide, a key intermediate in sphingolipid metabolism and an important
signaling molecule, is synthesized by a family of six ceramide synthases (CerS), each of …

DNA replication fork speed underlies cell fate changes and promotes reprogramming

T Nakatani, J Lin, F Ji, A Ettinger, J Pontabry… - Nature Genetics, 2022 - nature.com
Totipotency emerges in early embryogenesis, but its molecular underpinnings remain poorly
characterized. In the present study, we employed DNA fiber analysis to investigate how …

DNA replication timing

N Rhind, DM Gilbert - Cold Spring Harbor perspectives …, 2013 - cshperspectives.cshlp.org
Patterns of replication within eukaryotic genomes correlate with gene expression, chromatin
structure, and genome evolution. Recent advances in genome-scale mapping of replication …

Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types

T Ryba, I Hiratani, J Lu, M Itoh, M Kulik… - Genome …, 2010 - genome.cshlp.org
To identify evolutionarily conserved features of replication timing and their relationship to
epigenetic properties, we profiled replication timing genome-wide in four human embryonic …

Sequencing newly replicated DNA reveals widespread plasticity in human replication timing

RS Hansen, S Thomas, R Sandstrom… - Proceedings of the …, 2010 - National Acad Sciences
Faithful transmission of genetic material to daughter cells involves a characteristic temporal
order of DNA replication, which may play a significant role in the inheritance of epigenetic …

Eukaryotic chromosome DNA replication: where, when, and how?

H Masai, S Matsumoto, Z You… - Annual review of …, 2010 - annualreviews.org
DNA replication is central to cell proliferation. Studies in the past six decades since the
proposal of a semiconservative mode of DNA replication have confirmed the high degree of …

Cell-type-specific replication initiation programs set fragility of the FRA3B fragile site

A Letessier, GA Millot, S Koundrioukoff, AM Lachagès… - Nature, 2011 - nature.com
Common fragile sites have long been identified by cytogeneticists as chromosomal regions
prone to breakage upon replication stress. They are increasingly recognized to be …

High-resolution Repli-Seq defines the temporal choreography of initiation, elongation and termination of replication in mammalian cells

PA Zhao, T Sasaki, DM Gilbert - Genome biology, 2020 - Springer
Background DNA replication in mammalian cells occurs in a defined temporal order during
S phase, known as the replication timing (RT) programme. Replication timing is …

Rif1 regulates the replication timing domains on the human genome

S Yamazaki, A Ishii, Y Kanoh, M Oda, Y Nishito… - The EMBO …, 2012 - embopress.org
DNA replication is spatially and temporally regulated during S‐phase. DNA replication
timing is established in early‐G1‐phase at a point referred to as timing decision point …