New approaches for genome assembly and scaffolding

ES Rice, RE Green - Annual review of animal biosciences, 2019 - annualreviews.org
Affordable, high-throughput DNA sequencing has accelerated the pace of genome
assembly over the past decade. Genome assemblies from high-throughput, short-read …

Sex chromosome evolution among amniotes: is the origin of sex chromosomes non-random?

L Kratochvíl, T Gamble… - … Transactions of the …, 2021 - royalsocietypublishing.org
Sex chromosomes are a great example of a convergent evolution at the genomic level,
having evolved dozens of times just within amniotes. An intriguing question is whether this …

Evolutionary analysis of a complete chicken genome

Z Huang, Z Xu, H Bai, Y Huang… - Proceedings of the …, 2023 - National Acad Sciences
Microchromosomes are prevalent in nonmammalian vertebrates [PD Waters et al., Proc.
Natl. Acad. Sci. USA 118 (2021)], but a few of them are missing in bird genome assemblies …

Microchromosomes are building blocks of bird, reptile, and mammal chromosomes

PD Waters, HR Patel, A Ruiz-Herrera… - Proceedings of the …, 2021 - National Acad Sciences
Microchromosomes, once considered unimportant shreds of the chicken genome, are gene-
rich elements with a high GC content and few transposable elements. Their origin has been …

The origins and evolution of chromosomes, dosage compensation, and mechanisms underlying venom regulation in snakes

DR Schield, DC Card, NR Hales, BW Perry… - Genome …, 2019 - genome.cshlp.org
Here we use a chromosome-level genome assembly of a prairie rattlesnake (Crotalus
viridis), together with Hi-C, RNA-seq, and whole-genome resequencing data, to study key …

Reconstruction of hundreds of reference ancestral genomes across the eukaryotic kingdom

M Muffato, A Louis, NTT Nguyen, J Lucas… - Nature Ecology & …, 2023 - nature.com
Ancestral sequence reconstruction is a fundamental aspect of molecular evolution studies
and can trace small-scale sequence modifications through the evolution of genomes and …

Vertebrate chromosome evolution

J Damas, M Corbo, HA Lewin - Annual Review of Animal …, 2021 - annualreviews.org
The study of chromosome evolution is undergoing a resurgence of interest owing to
advances in DNA sequencing technology that facilitate the production of chromosome-scale …

Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots

Z Huang, I De O. Furo, J Liu, V Peona… - Nature …, 2022 - nature.com
The karyotype of most birds has remained considerably stable during more than 100 million
years' evolution, except for some groups, such as parrots. The evolutionary processes and …

[图书][B] Atlas of mammalian chromosomes

SJ O'Brien, JC Menninger, WG Nash - 2006 - books.google.com
A stunning visual collection of the banded metaphase chromosomekaryotypes from some
850 species of mammals, the Atlas of MammalianChromosomes represents an unabridged …

Three amphioxus reference genomes reveal gene and chromosome evolution of chordates

Z Huang, L Xu, C Cai, Y Zhou, J Liu… - Proceedings of the …, 2023 - National Acad Sciences
The slow-evolving invertebrate amphioxus has an irreplaceable role in advancing our
understanding of the vertebrate origin and innovations. Here we resolve the nearly complete …