The emerging role of mass spectrometry-based proteomics in drug discovery

F Meissner, J Geddes-McAlister, M Mann… - Nature Reviews Drug …, 2022 - nature.com
Proteins are the main targets of most drugs; however, system-wide methods to monitor
protein activity and function are still underused in drug discovery. Novel biochemical …

A critical review of bottom-up proteomics: the good, the bad, and the future of this field

EJ Dupree, M Jayathirtha, H Yorkey, M Mihasan… - Proteomes, 2020 - mdpi.com
Proteomics is the field of study that includes the analysis of proteins, from either a basic
science prospective or a clinical one. Proteins can be investigated for their abundance …

Mapping the degradable kinome provides a resource for expedited degrader development

KA Donovan, FM Ferguson, JW Bushman, NA Eleuteri… - Cell, 2020 - cell.com
Targeted protein degradation (TPD) refers to the use of small molecules to induce ubiquitin-
dependent degradation of proteins. TPD is of interest in drug development, as it can address …

Chalcone: a privileged structure in medicinal chemistry

C Zhuang, W Zhang, C Sheng, W Zhang, C Xing… - Chemical …, 2017 - ACS Publications
Privileged structures have been widely used as an effective template in medicinal chemistry
for drug discovery. Chalcone is a common simple scaffold found in many naturally occurring …

Pharmacological perturbation of CDK9 using selective CDK9 inhibition or degradation

CM Olson, B Jiang, MA Erb, Y Liang, ZM Doctor… - Nature chemical …, 2018 - nature.com
Abstract Cyclin-dependent kinase 9 (CDK9), an important regulator of transcriptional
elongation, is a promising target for cancer therapy, particularly for cancers driven by …

[HTML][HTML] Proteomic discovery of chemical probes that perturb protein complexes in human cells

MR Lazear, JR Remsberg, MG Jaeger, K Rothamel… - Molecular cell, 2023 - cell.com
Most human proteins lack chemical probes, and several large-scale and generalizable small-
molecule binding assays have been introduced to address this problem. How compounds …

Click chemistry in proteomic investigations

CG Parker, MR Pratt - Cell, 2020 - cell.com
Despite advances in genetic and proteomic techniques, a complete portrait of the proteome
and its complement of dynamic interactions and modifications remains a lofty, and as of yet …

A chemoproteomic approach to query the degradable kinome using a multi-kinase degrader

HT Huang, D Dobrovolsky, J Paulk, G Yang… - Cell chemical …, 2018 - cell.com
Heterobifunctional molecules that recruit E3 ubiquitin ligases, such as cereblon, for targeted
protein degradation represent an emerging pharmacological strategy. A major unanswered …

Global profiling of lysine reactivity and ligandability in the human proteome

SM Hacker, KM Backus, MR Lazear, S Forli… - Nature …, 2017 - nature.com
Nucleophilic amino acids make important contributions to protein function, including
performing key roles in catalysis and serving as sites for post-translational modification …

A new dawn beyond lysine ubiquitination

DR Squair, S Virdee - Nature Chemical Biology, 2022 - nature.com
The ubiquitin system has become synonymous with the modification of lysine residues.
However, the substrate scope and diversity of the conjugation machinery have been …