Image-based profiling for drug discovery: due for a machine-learning upgrade?

SN Chandrasekaran, H Ceulemans, JD Boyd… - Nature Reviews Drug …, 2021 - nature.com
Image-based profiling is a maturing strategy by which the rich information present in
biological images is reduced to a multidimensional profile, a collection of extracted image …

[HTML][HTML] Data-analysis strategies for image-based cell profiling

JC Caicedo, S Cooper, F Heigwer, S Warchal, P Qiu… - Nature …, 2017 - nature.com
Image-based cell profiling is a high-throughput strategy for the quantification of phenotypic
differences among a variety of cell populations. It paves the way to studying biological …

Cell Painting, a high-content image-based assay for morphological profiling using multiplexed fluorescent dyes

MA Bray, S Singh, H Han, CT Davis, B Borgeson… - Nature protocols, 2016 - nature.com
In morphological profiling, quantitative data are extracted from microscopy images of cells to
identify biologically relevant similarities and differences among samples based on these …

The strategies and techniques of drug discovery from natural products

L Zhang, J Song, L Kong, T Yuan, W Li, W Zhang… - Pharmacology & …, 2020 - Elsevier
Natural products have been the main sources of new drugs. The different strategies have
been developed to find the new drugs based on natural products. The traditional and ethic …

Target identification and mechanism of action in chemical biology and drug discovery

M Schenone, V Dančík, BK Wagner… - Nature chemical …, 2013 - nature.com
Target-identification and mechanism-of-action studies have important roles in small-
molecule probe and drug discovery. Biological and technological advances have resulted in …

Microscopy-based high-content screening

M Boutros, F Heigwer, C Laufer - Cell, 2015 - cell.com
Image-based screening is used to measure a variety of phenotypes in cells and whole
organisms. Combined with perturbations such as RNA interference, small molecules, and …

Predicting new molecular targets for known drugs

MJ Keiser, V Setola, JJ Irwin, C Laggner, AI Abbas… - Nature, 2009 - nature.com
Although drugs are intended to be selective, at least some bind to several physiological
targets, explaining side effects and efficacy. Because many drug–target combinations exist …

High-content screening for quantitative cell biology

MM Usaj, EB Styles, AJ Verster, H Friesen, C Boone… - Trends in cell …, 2016 - cell.com
High-content screening (HCS), which combines automated fluorescence microscopy with
quantitative image analysis, allows the acquisition of unbiased multiparametric data at the …

Fumarate induces redox-dependent senescence by modifying glutathione metabolism

L Zheng, S Cardaci, L Jerby, ED MacKenzie… - Nature …, 2015 - nature.com
Mutations in the tricarboxylic acid (TCA) cycle enzyme fumarate hydratase (FH) are
associated with a highly malignant form of renal cancer. We combined analytical chemistry …

Dynamic proteomics of individual cancer cells in response to a drug

AA Cohen, N Geva-Zatorsky, E Eden… - science, 2008 - science.org
Why do seemingly identical cells respond differently to a drug? To address this, we studied
the dynamics and variability of the protein response of human cancer cells to a …