Prediction of bio-sequence modifications and the associations with diseases

C Ao, L Yu, Q Zou - Briefings in Functional Genomics, 2021 - academic.oup.com
Modifications of protein, RNA and DNA play an important role in many biological processes
and are related to some diseases. Therefore, accurate identification and comprehensive …

Advances in predicting subcellular localization of multi-label proteins and its implication for developing multi-target drugs

KC Chou - Current medicinal chemistry, 2019 - ingentaconnect.com
The smallest unit of life is a cell, which contains numerous protein molecules. Most of the
functions critical to the cell's survival are performed by these proteins located in its different …

Machine learning in enzyme engineering

S Mazurenko, Z Prokop, J Damborsky - ACS Catalysis, 2019 - ACS Publications
Enzyme engineering plays a central role in developing efficient biocatalysts for
biotechnology, biomedicine, and life sciences. Apart from classical rational design and …

Development of machine learning model for diagnostic disease prediction based on laboratory tests

DJ Park, MW Park, H Lee, YJ Kim, Y Kim, YH Park - Scientific reports, 2021 - nature.com
The use of deep learning and machine learning (ML) in medical science is increasing,
particularly in the visual, audio, and language data fields. We aimed to build a new …

mAHTPred: a sequence-based meta-predictor for improving the prediction of anti-hypertensive peptides using effective feature representation

B Manavalan, S Basith, TH Shin, L Wei, G Lee - Bioinformatics, 2019 - academic.oup.com
Motivation Cardiovascular disease is the primary cause of death globally accounting for
approximately 17.7 million deaths per year. One of the stakes linked with cardiovascular …

Deep-Kcr: accurate detection of lysine crotonylation sites using deep learning method

H Lv, FY Dao, ZX Guan, H Yang, YW Li… - Briefings in …, 2021 - academic.oup.com
As a newly discovered protein posttranslational modification, histone lysine crotonylation
(Kcr) involved in cellular regulation and human diseases. Various proteomics technologies …

Meta-i6mA: an interspecies predictor for identifying DNA N6-methyladenine sites of plant genomes by exploiting informative features in an integrative machine …

MM Hasan, S Basith, MS Khatun, G Lee… - Briefings in …, 2021 - academic.oup.com
Abstract DNA N 6-methyladenine (6mA) represents important epigenetic modifications,
which are responsible for various cellular processes. The accurate identification of 6mA sites …

iRNA (m6A)-PseDNC: identifying N6-methyladenosine sites using pseudo dinucleotide composition

W Chen, H Ding, X Zhou, H Lin, KC Chou - Analytical biochemistry, 2018 - Elsevier
As a prevalent post-transcriptional modification, N 6-methyladenosine (m 6 A) plays key
roles in a series of biological processes. Although experimental technologies have been …

SDM6A: a web-based integrative machine-learning framework for predicting 6mA sites in the rice genome

S Basith, B Manavalan, TH Shin, G Lee - Molecular Therapy-Nucleic Acids, 2019 - cell.com
DNA N 6-adenine methylation (6mA) is an epigenetic modification in prokaryotes and
eukaryotes. Identifying 6mA sites in rice genome is important in rice epigenetics and …

Learning epistasis and residue coevolution patterns: Current trends and future perspectives for advancing enzyme engineering

M Wittmund, F Cadet, MD Davari - ACS catalysis, 2022 - ACS Publications
Engineering proteins and enzymes with the desired functionality has broad applications in
molecular biology, biotechnology, biomedical sciences, health, and medicine. The vastness …