Clinical potential of mass spectrometry-based proteogenomics

B Zhang, JR Whiteaker, AN Hoofnagle… - Nature Reviews …, 2019 - nature.com
Cancer genomics research aims to advance personalized oncology by finding and targeting
specific genetic alterations associated with cancers. In genome-driven oncology, treatments …

Phosphopeptide fragmentation and site localization by mass spectrometry: an update

CM Potel, S Lemeer, AJR Heck - Analytical chemistry, 2018 - ACS Publications
Pioneering work by, among others, the groups of Hunt and Mann at the start of this century
opened up the era of mass spectrometry (MS)-based phosphoproteomics. 1− 3 Through …

Application of targeted mass spectrometry in bottom-up proteomics for systems biology research

NP Manes, A Nita-Lazar - Journal of proteomics, 2018 - Elsevier
The enormous diversity of proteoforms produces tremendous complexity within cellular
proteomes, facilitates intricate networks of molecular interactions, and constitutes a …

Detecting post-translational modification signatures as potential biomarkers in clinical mass spectrometry

R Mnatsakanyan, G Shema, M Basik… - Expert Review of …, 2018 - Taylor & Francis
Introduction: Numerous diseases are caused by changes in post-translational modifications
(PTMs). Therefore, the number of clinical proteomics studies that include the analysis of …

Loss of TGFβ signaling increases alternative end-joining DNA repair that sensitizes to genotoxic therapies across cancer types

Q Liu, L Palomero, J Moore, I Guix, R Espín… - Science translational …, 2021 - science.org
Among the pleotropic roles of transforming growth factor–β (TGFβ) signaling in cancer, its
impact on genomic stability is least understood. Inhibition of TGFβ signaling increases use of …

A new panel of pancreatic cancer biomarkers discovered using a mass spectrometry-based pipeline

X Liu, W Zheng, W Wang, H Shen, L Liu, W Lou… - British journal of …, 2017 - nature.com
Background: Pancreatic carcinoma (PC) is an aggressive malignancy that lacks strategies
for early detection. This study aimed to develop a coherent, high-throughput and non …

Towards comprehensive and quantitative proteomics for diagnosis and therapy of human disease

P Cifani, A Kentsis - Proteomics, 2017 - Wiley Online Library
Given superior analytical features, MS proteomics is well suited for the basic investigation
and clinical diagnosis of human disease. Modern MS enables detailed functional …

Characterizing disease-associated changes in post-translational modifications by mass spectrometry

C Thygesen, I Boll, B Finsen, M Modzel… - Expert review of …, 2018 - Taylor & Francis
Introduction: Exploring post-translational modifications (PTMs) with the use of mass
spectrometry (PTMomics) is a rapidly developing area, with methods for discovery …

Targeted Phosphoproteomics of Human Saliva Extracellular Vesicles via Multiple Reaction Monitoring Cubed (MRM3)

D Wei, J Sun, Z Luo, G Zhang, Y Liu, H Zhang… - Analytical …, 2024 - ACS Publications
Oral squamous cell carcinoma (OSCC) has become a global health problem due to its
increasing incidence and high mortality rate. Early intervention through monitoring of the …

Targeted mass spectrometry enables multiplexed quantification of immunomodulatory proteins in clinical biospecimens

JR Whiteaker, RA Lundeen, L Zhao… - Frontiers in …, 2021 - frontiersin.org
Immunotherapies are revolutionizing cancer care, producing durable responses and
potentially cures in a subset of patients. However, response rates are low for most tumors …