IAPs on the move: role of inhibitors of apoptosis proteins in cell migration

TK Oberoi-Khanuja, A Murali, K Rajalingam - Cell death & disease, 2013 - nature.com
Abstract Inhibitors of Apoptosis Proteins (IAPs) are a class of highly conserved proteins
predominantly known for the regulation of caspases and immune signaling. However, recent …

Aging and cell death in the other yeasts, Schizosaccharomyces pombe and Candida albicans

SJ Lin, N Austriaco - FEMS yeast research, 2014 - academic.oup.com
How do cells age and die? For the past 20 years, the budding yeast, Saccharomyces
cerevisiae, has been used as a model organism to uncover the genes that regulate lifespan …

SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools

C Chaouiya, D Bérenguier, SM Keating, A Naldi… - BMC systems …, 2013 - Springer
Background Qualitative frameworks, especially those based on the logical discrete
formalism, are increasingly used to model regulatory and signalling networks. A major …

Steady state analysis of Boolean molecular network models via model reduction and computational algebra

A Veliz-Cuba, B Aguilar, F Hinkelmann… - BMC …, 2014 - Springer
Background A key problem in the analysis of mathematical models of molecular networks is
the determination of their steady states. The present paper addresses this problem for …

[HTML][HTML] Cell-cycle involvement in autophagy and apoptosis in yeast

M Azzopardi, G Farrugia, R Balzan - Mechanisms of ageing and …, 2017 - Elsevier
Regulation of the cell cycle and apoptosis are two eukaryotic processes required to ensure
maintenance of genomic integrity, especially in response to DNA damage. The ease with …

A Framework of Pinning Control for Non-periodical Stable Behaviors of Large-scale Asynchronous Boolean Networks

J Zhong, Q Pan, W Xu, B Chen - IEEE Transactions on …, 2024 - ieeexplore.ieee.org
In this paper, two pinning control (PC) schemes are proposed to achieve non-periodical
stable behaviors for asynchronous Boolean networks (BNs), from the aspects of state …

Stability analysis of large-scale Boolean networks via compositional method

H Li, X Pang - Automatica, 2024 - Elsevier
This paper formulates a compositional method to alleviate the high computational cost of
studying large-scale Boolean networks (BNs). The algebraic expression of conjunctive …

A probabilistic Boolean model on hair follicle cell fate regulation by TGF-β

K Dinh, Q Wang - Biophysical journal, 2022 - cell.com
Hair follicles (HFs) are mini skin organs that undergo cyclic growth. Various signals regulate
HF cell fate decisions jointly. Recent experimental results suggest that transforming growth …

[HTML][HTML] A near-optimal control method for stochastic boolean networks

B Aguilar, P Fang, R Laubenbacher… - Letters in …, 2020 - ncbi.nlm.nih.gov
One of the ultimate goals in systems biology is to develop control strategies to find efficient
medical treatments. One step towards this goal is to develop methods for changing the state …

A novel data-driven boolean model for genetic regulatory networks

L Chen, D Kulasiri, S Samarasinghe - Frontiers in physiology, 2018 - frontiersin.org
A Boolean model is a simple, discrete and dynamic model without the need to consider the
effects at the intermediate levels. However, little effort has been made into constructing …