In-depth analysis of genomes and functional genomics of orchid using cutting-edge high-throughput sequencing

C Song, Y Wang, MA Manzoor, D Mao, P Wei… - Frontiers in Plant …, 2022 - frontiersin.org
High-throughput sequencing technology has been facilitated the development of new
methodologies and approaches for studying the origin and evolution of plant genomes and …

Multi-view design patterns and responsive visualization for genomics data

S L'Yi, N Gehlenborg - IEEE transactions on visualization and …, 2022 - ieeexplore.ieee.org
A series of recent studies has focused on designing cross-resolution and cross-device
visualizations, ie, responsive visualization, a concept adopted from responsive web design …

Whole-genome sequence diversity and association analysis of 198 soybean accessions in mini-core collections

H Kajiya-Kanegae, H Nagasaki, A Kaga… - DNA …, 2021 - academic.oup.com
We performed whole-genome Illumina resequencing of 198 accessions to examine the
genetic diversity and facilitate the use of soybean genetic resources and identified 10 million …

MORE PANICLES 3, a natural allele of OsTB1/FC1, impacts rice yield in paddy fields at elevated CO2 levels

T Takai, Y Taniguchi, M Takahashi… - The Plant …, 2023 - Wiley Online Library
Improving crop yield potential through an enhanced response to rising atmospheric CO2
levels is an effective strategy for sustainable crop production in the face of climate change …

Genome-and transcriptome-wide association studies to discover candidate genes for diverse root phenotypes in cultivated rice

S Wei, R Tanaka, T Kawakatsu, S Teramoto, N Tanaka… - Rice, 2023 - Springer
Root system architecture plays a crucial role in nutrient and water absorption during rice
production. Genetic improvement of the rice root system requires elucidating its genetic …

Plant GARDEN: a portal website for cross-searching between different types of genomic and genetic resources in a wide variety of plant species

H Ichihara, M Yamada, M Kohara, H Hirakawa… - BMC Plant …, 2023 - Springer
Background Plant genome information is fundamental to plant research and development.
Along with the increase in the number of published plant genomes, there is a need for an …

Investigation of the genetic diversity of a rice core collection of Japanese landraces using whole-genome sequencing

N Tanaka, M Shenton, Y Kawahara… - Plant and Cell …, 2020 - academic.oup.com
Abstract The Rice Core Collection of Japanese Landraces (JRC) consisting of 50
accessions was developed by the genebank at the National Agriculture and Food Research …

Identification of Grain Size-Related QTLs in Korean japonica Rice Using Genome Resequencing and High-Throughput Image Analysis

Y Shin, YJ Won, C Lee, KS Cheon, H Oh, GS Lee… - Agriculture, 2022 - mdpi.com
Grain size is a key factor influencing the grain yield in rice. To identify the as-yet-unknown
genes regulating grain size in Korean japonica rice, we developed a recombinant inbred …

Direct identification of a mutation in OsSh1 causing non-shattering in a rice (Oryza sativa L.) mutant cultivar using whole-genome resequencing

F Li, A Komatsu, M Ohtake, H Eun, A Shimizu… - Scientific Reports, 2020 - nature.com
Loss of seed shattering has been regarded as a key step during crop domestication.
Mutagenesis contributes to the development of novel crop cultivars with a desired seed …

OryzaGenome2.1: Database of Diverse Genotypes in Wild Oryza Species

H Kajiya-Kanegae, H Ohyanagi, T Ebata, Y Tanizawa… - Rice, 2021 - Springer
Abstract Background OryzaGenome (http://viewer. shigen. info/oryzagenome21detail/index.
xhtml), a feature within Oryzabase (https://shigen. nig. ac. jp/rice/oryzabase/), is a genomic …