Network propagation: a universal amplifier of genetic associations

L Cowen, T Ideker, BJ Raphael, R Sharan - Nature Reviews Genetics, 2017 - nature.com
Biological networks are powerful resources for the discovery of genes and genetic modules
that drive disease. Fundamental to network analysis is the concept that genes underlying the …

Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review

P Csermely, T Korcsmáros, HJM Kiss, G London… - Pharmacology & …, 2013 - Elsevier
Despite considerable progress in genome-and proteome-based high-throughput screening
methods and in rational drug design, the increase in approved drugs in the past decade did …

ToppGene Suite for gene list enrichment analysis and candidate gene prioritization

J Chen, EE Bardes, BJ Aronow… - Nucleic acids …, 2009 - academic.oup.com
Abstract ToppGene Suite (http://toppgene. cchmc. org; this web site is free and open to all
users and does not require a login to access) is a one-stop portal for (i) gene list functional …

The power of protein interaction networks for associating genes with diseases

S Navlakha, C Kingsford - Bioinformatics, 2010 - academic.oup.com
Motivation: Understanding the association between genetic diseases and their causal genes
is an important problem concerning human health. With the recent influx of high-throughput …

Disease candidate gene identification and prioritization using protein interaction networks

J Chen, BJ Aronow, AG Jegga - BMC bioinformatics, 2009 - Springer
Background Although most of the current disease candidate gene identification and
prioritization methods depend on functional annotations, the coverage of the gene functional …

Identifying gene-disease associations using centrality on a literature mined gene-interaction network

A Özgür, T Vu, G Erkan, DR Radev - Bioinformatics, 2008 - academic.oup.com
Motivation: Understanding the role of genetics in diseases is one of the most important aims
of the biological sciences. The completion of the Human Genome Project has led to a rapid …

Molecular networks for the study of TCM pharmacology

J Zhao, P Jiang, W Zhang - Briefings in Bioinformatics, 2010 - academic.oup.com
To target complex, multi-factorial diseases more effectively, there has been an emerging
trend of multi-target drug development based on network biology, as well as an increasing …

Building disease-specific drug-protein connectivity maps from molecular interaction networks and PubMed abstracts

J Li, X Zhu, JY Chen - PLoS computational biology, 2009 - journals.plos.org
The recently proposed concept of molecular connectivity maps enables researchers to
integrate experimental measurements of genes, proteins, metabolites, and drug compounds …

Protein interactions and disease: computational approaches to uncover the etiology of diseases

MG Kann - Briefings in bioinformatics, 2007 - academic.oup.com
The genomic era has been characterised by vast amounts of data from diverse sources,
creating a need for new tools to extract biologically meaningful information. Bioinformatics is …

[图书][B] Biomolecular networks: methods and applications in systems biology

AY Zomaya, Y Pan - 2009 - books.google.com
Alternative techniques and tools for analyzing biomolecular networks With the recent rapid
advances in molecular biology, high-throughput experimental methods have resulted in …