Identification of Nitrogen Fixation Genes in Lactococcus Isolated from Maize Using Population Genomics and Machine Learning
Sierra Mixe maize is a landrace variety from Oaxaca, Mexico, that utilizes nitrogen derived
from the atmosphere via an undefined nitrogen fixation mechanism. The diazotrophic …
from the atmosphere via an undefined nitrogen fixation mechanism. The diazotrophic …
Monitoring the microbiome for food safety and quality using deep shotgun sequencing
KL Beck, N Haiminen, D Chambliss, S Edlund… - npj Science of …, 2021 - nature.com
In this work, we hypothesized that shifts in the food microbiome can be used as an indicator
of unexpected contaminants or environmental changes. To test this hypothesis, we …
of unexpected contaminants or environmental changes. To test this hypothesis, we …
Functional profiling of COVID-19 respiratory tract microbiomes
In response to the ongoing global pandemic, characterizing the molecular-level host
interactions of the new coronavirus SARS-CoV-2 responsible for COVID-19 has been at the …
interactions of the new coronavirus SARS-CoV-2 responsible for COVID-19 has been at the …
Functional genomics platform, a cloud-based platform for studying microbial life at scale
The rapid growth in biological sequence data is revolutionizing our understanding of
genotypic diversity and challenging conventional approaches to informatics. With the …
genotypic diversity and challenging conventional approaches to informatics. With the …
Biological Machine Learning Combined with Campylobacter Population Genomics Reveals Virulence Gene Allelic Variants Cause Disease
DJDR Bandoy, BC Weimer - Microorganisms, 2020 - mdpi.com
Highly dimensional data generated from bacterial whole-genome sequencing is providing
an unprecedented scale of information that requires an appropriate statistical analysis …
an unprecedented scale of information that requires an appropriate statistical analysis …
WGS of intrauterine E. coli from cows with early postpartum uterine infection reveals a non-uterine specific genotype and virulence factors
Escherichia coli has been attributed to playing a major role in a cascade of events that affect
the prevalence and severity of uterine disease in cattle. The objectives of this project were to …
the prevalence and severity of uterine disease in cattle. The objectives of this project were to …
[PDF][PDF] Functional pathways in respiratory tract microbiome separate COVID-19 from community-acquired pneumonia patients
In response to the global pandemic of the last four months, progress has been made in
understanding the molecular-level host interactions of the new coronavirus SARS-Cov-2 …
understanding the molecular-level host interactions of the new coronavirus SARS-Cov-2 …
Commensal or pathogen: computational vectorizing microbial genomes for de novo risk assessment and virulence feature discovery in Klebsiella pneumoniae
Bacterial pathogenicity has traditionally focused on gene-level content with experimentally-
confirmed functional properties. Hence, significant inferences are made based on similarity …
confirmed functional properties. Hence, significant inferences are made based on similarity …