ToppGene Suite for gene list enrichment analysis and candidate gene prioritization
Abstract ToppGene Suite (http://toppgene. cchmc. org; this web site is free and open to all
users and does not require a login to access) is a one-stop portal for (i) gene list functional …
users and does not require a login to access) is a one-stop portal for (i) gene list functional …
[图书][B] Semantic similarity from natural language and ontology analysis
Artificial Intelligence federates numerous scientific fields in the aim of developing machines
able to assist human operators performing complex treatments---most of which demand high …
able to assist human operators performing complex treatments---most of which demand high …
[图书][B] Fundamentals of computational intelligence: neural networks, fuzzy systems, and evolutionary computation
Provides an in-depth and even treatment of the three pillars of computational intelligence
and how they relate to one another This book covers the three fundamental topics that form …
and how they relate to one another This book covers the three fundamental topics that form …
Semantic similarity analysis of protein data: assessment with biological features and issues
The integration of proteomics data with biological knowledge is a recent trend in
bioinformatics. A lot of biological information is available and is spread on different sources …
bioinformatics. A lot of biological information is available and is spread on different sources …
Improved human disease candidate gene prioritization using mouse phenotype
Background The majority of common diseases are multi-factorial and modified by genetically
and mechanistically complex polygenic interactions and environmental factors. High …
and mechanistically complex polygenic interactions and environmental factors. High …
Gene Ontology term overlap as a measure of gene functional similarity
M Mistry, P Pavlidis - BMC bioinformatics, 2008 - Springer
Background The availability of various high-throughput experimental and computational
methods allows biologists to rapidly infer functional relationships between genes. It is often …
methods allows biologists to rapidly infer functional relationships between genes. It is often …
Semantic measures for the comparison of units of language, concepts or instances from text and knowledge base analysis
Semantic measures are widely used today to estimate the strength of the semantic
relationship between elements of various types: units of language (eg, words, sentences …
relationship between elements of various types: units of language (eg, words, sentences …
IntelliGO: a new vector-based semantic similarity measure including annotation origin
Abstract Background The Gene Ontology (GO) is a well known controlled vocabulary
describing the biological process, molecular function and cellular component aspects of …
describing the biological process, molecular function and cellular component aspects of …
Structure learning with similarity preserving
Leveraging on the underlying low-dimensional structure of data, low-rank and sparse
modeling approaches have achieved great success in a wide range of applications …
modeling approaches have achieved great success in a wide range of applications …
ProLoc-GO: utilizing informative Gene Ontology terms for sequence-based prediction of protein subcellular localization
Abstract Background Gene Ontology (GO) annotation, which describes the function of genes
and gene products across species, has recently been used to predict protein subcellular and …
and gene products across species, has recently been used to predict protein subcellular and …