A comprehensive map of the mTOR signaling network

E Caron, S Ghosh, Y Matsuoka… - Molecular systems …, 2010 - embopress.org
The mammalian target of rapamycin (mTOR) is a central regulator of cell growth and
proliferation. mTOR signaling is frequently dysregulated in oncogenic cells, and thus an …

[HTML][HTML] Nutritional protective mechanisms against gut inflammation

M Viladomiu, R Hontecillas, L Yuan, P Lu… - The Journal of nutritional …, 2013 - Elsevier
Inflammatory bowel disease (IBD) is a debilitating and widespread immune-mediated illness
characterized by excessive inflammatory and effector mucosal responses leading to tissue …

Reactome: a database of reactions, pathways and biological processes

D Croft, G O'kelly, G Wu, R Haw… - Nucleic acids …, 2010 - academic.oup.com
Abstract Reactome (http://www. reactome. org) is a collaboration among groups at the
Ontario Institute for Cancer Research, Cold Spring Harbor Laboratory, New York University …

Network visualization and analysis of gene expression data using BioLayout Express3D

A Theocharidis, S Van Dongen, AJ Enright… - Nature protocols, 2009 - nature.com
Network analysis has an increasing role in our effort to understand the complexity of
biological systems. This is because of our ability to generate large data sets, where the …

SABIO-RK—database for biochemical reaction kinetics

U Wittig, R Kania, M Golebiewski, M Rey… - Nucleic acids …, 2012 - academic.oup.com
Abstract SABIO-RK (http://sabio. h-its. org/) is a web-accessible database storing
comprehensive information about biochemical reactions and their kinetic properties. SABIO …

The mechanism of superoxide production by the antimycin-inhibited mitochondrial Q-cycle

CL Quinlan, AA Gerencser, JR Treberg… - Journal of Biological …, 2011 - ASBMB
Superoxide production from antimycin-inhibited complex III in isolated mitochondria first
increased to a maximum then decreased as substrate supply was modulated in three …

SABIO-RK: an updated resource for manually curated biochemical reaction kinetics

U Wittig, M Rey, A Weidemann, R Kania… - Nucleic acids …, 2018 - academic.oup.com
Abstract SABIO-RK (http://sabiork. h-its. org/) is a manually curated database containing data
about biochemical reactions and their reaction kinetics. The data are primarily extracted from …

Analysis of bacterial biofilms using NMR-based metabolomics

B Zhang, R Powers - Future medicinal chemistry, 2012 - Taylor & Francis
Infectious diseases can be difficult to cure, especially if the pathogen forms a biofilm. After
decades of extensive research into the morphology, physiology and genomics of biofilm …

Nano-particle mediated inhibition of Parkinson's disease using computational biology approach

AC Kaushik, S Bharadwaj, S Kumar, DQ Wei - Scientific reports, 2018 - nature.com
Parkinson's disease (PD) arises as neurodegenerative disorder and characterized by
progressive deterioration of motor functions due to forfeiture of dopamine-releasing neurons …

Event-based text mining for biology and functional genomics

S Ananiadou, P Thompson, R Nawaz… - Briefings in …, 2015 - academic.oup.com
The assessment of genome function requires a mapping between genome-derived entities
and biochemical reactions, and the biomedical literature represents a rich source of …