Autonomous discovery in the chemical sciences part I: Progress

CW Coley, NS Eyke, KF Jensen - … Chemie International Edition, 2020 - Wiley Online Library
This two‐part Review examines how automation has contributed to different aspects of
discovery in the chemical sciences. In this first part, we describe a classification for …

In silico toxicology: From structure–activity relationships towards deep learning and adverse outcome pathways

J Hemmerich, GF Ecker - Wiley Interdisciplinary Reviews …, 2020 - Wiley Online Library
In silico toxicology is an emerging field. It gains increasing importance as research is aiming
to decrease the use of animal experiments as suggested in the 3R principles by Russell and …

Formal concept analysis: from knowledge discovery to knowledge processing

S Ferré, M Huchard, M Kaytoue, SO Kuznetsov… - A Guided Tour of …, 2020 - Springer
In this chapter, we introduce Formal Concept Analysis (FCA) and some of its extensions.
FCA is a formalism based on lattice theory aimed at data analysis and knowledge …

Novel naïve Bayes classification models for predicting the chemical Ames mutagenicity

H Zhang, YL Kang, YY Zhu, KX Zhao, JY Liang, L Ding… - Toxicology in Vitro, 2017 - Elsevier
Prediction of drug candidates for mutagenicity is a regulatory requirement since mutagenic
compounds could pose a toxic risk to humans. The aim of this investigation was to develop a …

Evaluation of the applicability of existing (Q) SAR models for predicting the genotoxicity of pesticides and similarity analysis related with genotoxicity of pesticides for …

R Benigni, C Laura Battistelli, C Bossa… - EFSA Supporting …, 2019 - Wiley Online Library
To facilitate the practical implementation of the guidance on the residue definition for dietary
risk assessment, EFSA has organized an evaluation of applicability of existing in silico …

Ensemble learning method for the prediction of new bioactive molecules

LT Afolabi, F Saeed, H Hashim, OO Petinrin - PloS one, 2018 - journals.plos.org
Pharmacologically active molecules can provide remedies for a range of different illnesses
and infections. Therefore, the search for such bioactive molecules has been an enduring …

The pharmacophore network: a computational method for exploring structure–activity relationships from a large chemical data set

JP Métivier, B Cuissart, R Bureau… - Journal of medicinal …, 2018 - ACS Publications
Historically, structure–activity relationship (SAR) analysis has focused on small sets of
molecules, but in recent years, there has been increasing efforts to analyze the growing …

MOEA-EFEP: Multi-objective evolutionary algorithm for extracting fuzzy emerging patterns

ÁM García-Vico, CJ Carmona… - … on Fuzzy Systems, 2018 - ieeexplore.ieee.org
Emerging pattern mining is a data mining task that belongs to the supervized descriptive rule
discovery framework. Its objective is to find rules that describe emerging behavior or …

Bioalerts: a python library for the derivation of structural alerts from bioactivity and toxicity data sets

I Cortes-Ciriano - Journal of cheminformatics, 2016 - Springer
Background Assessing compound toxicity at early stages of the drug discovery process is a
crucial task to dismiss drug candidates likely to fail in clinical trials. Screening drug …

Fepds: A proposal for the extraction of fuzzy emerging patterns in data streams

ÁM García-Vico, CJ Carmona… - … on Fuzzy Systems, 2020 - ieeexplore.ieee.org
Nowadays, most data is generated by devices that produce data continuously. These kinds
of data can be categorized as data streams and valuable insights can be extracted from …