Emerging themes in CryoEM─ Single particle analysis image processing

JL Vilas, JM Carazo, COS Sorzano - Chemical Reviews, 2022 - ACS Publications
Cryo-electron microscopy (CryoEM) has become a vital technique in structural biology. It is
an interdisciplinary field that takes advantage of advances in biochemistry, physics, and …

Structural mechanism for tyrosine hydroxylase inhibition by dopamine and reactivation by Ser40 phosphorylation

MT Bueno-Carrasco, J Cuéllar, MI Flydal… - Nature …, 2022 - nature.com
Tyrosine hydroxylase (TH) catalyzes the rate-limiting step in the biosynthesis of dopamine
(DA) and other catecholamines, and its dysfunction leads to DA deficiency and …

Xmipp 3.0: an improved software suite for image processing in electron microscopy

JM De la Rosa-Trevín, J Otón, R Marabini… - Journal of structural …, 2013 - Elsevier
Xmipp is a specialized software package for image processing in electron microscopy, and
that is mainly focused on 3D reconstruction of macromolecules through single-particles …

Design of coiled-coil protein-origami cages that self-assemble in vitro and in vivo

A Ljubetič, F Lapenta, H Gradišar, I Drobnak… - Nature …, 2017 - nature.com
Polypeptides and polynucleotides are natural programmable biopolymers that can self-
assemble into complex tertiary structures. We describe a system analogous to designed …

The self-association equilibrium of DNAJA2 regulates its interaction with unfolded substrate proteins and with Hsc70

L Velasco-Carneros, J Cuéllar, L Dublang… - Nature …, 2023 - nature.com
J-domain proteins tune the specificity of Hsp70s, engaging them in precise functions.
Despite their essential role, the structure and function of many J-domain proteins remain …

Machine learning for structure determination in single-particle cryo-electron microscopy: A systematic review

JG Wu, Y Yan, DX Zhang, BW Liu… - … on Neural Networks …, 2021 - ieeexplore.ieee.org
Recently, single-particle cryo-electron microscopy (cryo-EM) has become an indispensable
method for determining macromolecular structures at high resolution to deeply explore the …

Dynamic kinetochore size regulation promotes microtubule capture and chromosome biorientation in mitosis

C Sacristan, MUD Ahmad, J Keller, J Fermie… - Nature cell …, 2018 - nature.com
Faithful chromosome segregation depends on the ability of sister kinetochores to attach to
spindle microtubules. The outer layer of kinetochores transiently expands in early mitosis to …

Small is big in Arabidopsis mitochondrial ribosome

F Waltz, TT Nguyen, M Arrivé, A Bochler, J Chicher… - Nature plants, 2019 - nature.com
Mitochondria are responsible for energy production through aerobic respiration, and
represent the powerhouse of eukaryotic cells. Their metabolism and gene expression …

Designed proteins induce the formation of nanocage-containing extracellular vesicles

J Votteler, C Ogohara, S Yi, Y Hsia, U Nattermann… - Nature, 2016 - nature.com
Complex biological processes are often performed by self-organizing nanostructures
comprising multiple classes of macromolecules, such as ribosomes (proteins and RNA) or …

Native top-down mass spectrometry provides insights into the copper centers of membrane-bound methane monooxygenase

SY Ro, LF Schachner, CW Koo, R Purohit… - Nature …, 2019 - nature.com
Aerobic methane oxidation is catalyzed by particulate methane monooxygenase (pMMO), a
copper-dependent, membrane metalloenzyme composed of subunits PmoA, PmoB, and …