Stochastic community assembly: does it matter in microbial ecology?

J Zhou, D Ning - Microbiology and molecular biology reviews, 2017 - Am Soc Microbiol
Understanding the mechanisms controlling community diversity, functions, succession, and
biogeography is a central, but poorly understood, topic in ecology, particularly in microbial …

Towards an enhanced understanding of plant–microbiome interactions to improve phytoremediation: engineering the metaorganism

S Thijs, W Sillen, F Rineau, N Weyens… - Frontiers in …, 2016 - frontiersin.org
Phytoremediation is a promising technology to clean-up contaminated soils based on the
synergistic actions of plants and microorganisms. However, to become a widely accepted …

A general framework for quantitatively assessing ecological stochasticity

D Ning, Y Deng, JM Tiedje… - Proceedings of the …, 2019 - National Acad Sciences
Understanding the community assembly mechanisms controlling biodiversity patterns is a
central issue in ecology. Although it is generally accepted that both deterministic and …

[HTML][HTML] Cautionary notes on the use of co-occurrence networks in soil ecology

M Goberna, M Verdú - Soil Biology and Biochemistry, 2022 - Elsevier
Soil ecology is witnessing exponential growth in the number of studies using co-occurrence
network analysis. Researchers reconstruct networks based on the co-occurrence of taxa or …

Environmental stress mediates groundwater microbial community assembly

D Ning, Y Wang, Y Fan, J Wang, JD Van Nostrand… - Nature …, 2024 - nature.com
Community assembly describes how different ecological processes shape microbial
community composition and structure. How environmental factors impact community …

Life-history strategies of soil microbial communities in an arid ecosystem

Y Chen, JW Neilson, P Kushwaha, RM Maier… - The ISME …, 2021 - academic.oup.com
The overwhelming taxonomic diversity and metabolic complexity of microorganisms can be
simplified by a life-history classification; copiotrophs grow faster and rely on resource …

Effect of no-tillage on soil bacterial and fungal community diversity: A meta-analysis

Y Li, D Song, S Liang, P Dang, X Qin, Y Liao… - Soil and Tillage …, 2020 - Elsevier
No-tillage farming is widespread globally; however, the impact of no-tillage on soil microbial
diversity is debatable. The existing research literature needs to be synthesized and a …

Rhizosheath microbial community assembly of sympatric desert speargrasses is independent of the plant host

R Marasco, MJ Mosqueira, M Fusi, JB Ramond… - Microbiome, 2018 - Springer
Background The rhizosheath-root system is an adaptive trait of sandy-desert speargrasses
in response to unfavourable moisture and nutritional conditions. Under the deserts' …

Decreases in average bacterial community rRNA operon copy number during succession

DR Nemergut, JE Knelman, S Ferrenberg… - The ISME …, 2016 - academic.oup.com
Trait-based studies can help clarify the mechanisms driving patterns of microbial community
assembly and coexistence. Here, we use a trait-based approach to explore the importance …

Consistent changes in the taxonomic structure and functional attributes of bacterial communities during primary succession

R Ortiz-Álvarez, N Fierer, A De Los Ríos… - The ISME …, 2018 - academic.oup.com
Ecologists have long studied primary succession, the changes that occur in biological
communities after initial colonization of an environment. Most of this work has focused on …