Function and functional redundancy in microbial systems

S Louca, MF Polz, F Mazel, MBN Albright… - Nature ecology & …, 2018 - nature.com
Microbial communities often exhibit incredible taxonomic diversity, raising questions
regarding the mechanisms enabling species coexistence and the role of this diversity in …

Polysaccharide degradation by the Bacteroidetes: mechanisms and nomenclature

LS McKee, SL La Rosa, B Westereng… - Environmental …, 2021 - Wiley Online Library
The Bacteroidetes phylum is renowned for its ability to degrade a wide range of complex
carbohydrates, a trait that has enabled its dominance in many diverse environments. The …

Genome content predicts the carbon catabolic preferences of heterotrophic bacteria

M Gralka, S Pollak, OX Cordero - Nature Microbiology, 2023 - nature.com
Heterotrophic bacteria—bacteria that utilize organic carbon sources—are taxonomically and
functionally diverse across environments. It is challenging to map metabolic interactions and …

Emergent simplicity in microbial community assembly

JE Goldford, N Lu, D Bajić, S Estrela, M Tikhonov… - Science, 2018 - science.org
A major unresolved question in microbiome research is whether the complex taxonomic
architectures observed in surveys of natural communities can be explained and predicted by …

Verrucomicrobia use hundreds of enzymes to digest the algal polysaccharide fucoidan

A Sichert, CH Corzett, MS Schechter, F Unfried… - Nature …, 2020 - nature.com
Brown algae are important players in the global carbon cycle by fixing carbon dioxide into 1
Gt of biomass annually, yet the fate of fucoidan—their major cell wall polysaccharide …

The biogeochemistry of marine polysaccharides: sources, inventories, and bacterial drivers of the carbohydrate cycle

C Arnosti, M Wietz, T Brinkhoff… - Annual Review of …, 2021 - annualreviews.org
Polysaccharides are major components of macroalgal and phytoplankton biomass and
constitute a large fraction of the organic matter produced and degraded in the ocean. Until …

A lasting symbiosis: how Vibrio fischeri finds a squid partner and persists within its natural host

KL Visick, EV Stabb, EG Ruby - Nature Reviews Microbiology, 2021 - nature.com
As our understanding of the human microbiome progresses, so does the need for natural
experimental animal models that promote a mechanistic understanding of beneficial …

Mini‐review: Phytoplankton‐derived polysaccharides in the marine environment and their interactions with heterotrophic bacteria

M Mühlenbruch, HP Grossart… - Environmental …, 2018 - Wiley Online Library
Within the wealth of molecules constituting marine dissolved organic matter, carbohydrates
make up the largest coherent and quantifiable fraction. Their main sources are from primary …

Resolving the structure of phage–bacteria interactions in the context of natural diversity

KM Kauffman, WK Chang, JM Brown… - Nature …, 2022 - nature.com
Microbial communities are shaped by viral predators. Yet, resolving which viruses (phages)
and bacteria are interacting is a major challenge in the context of natural levels of microbial …

Microbial genomic taxonomy.

CC Thompson, L Vidal, V Salazar… - Trends in the …, 2021 - cabidigitallibrary.org
This book chapter argues for an open-access catalogue of taxonomic descriptions with
prototypes; diagnostic tables; and links to culture collections, to genome and gene …