Bayesian parameter estimation for dynamical models in systems biology

NJ Linden, B Kramer, P Rangamani - PLoS computational biology, 2022 - journals.plos.org
Dynamical systems modeling, particularly via systems of ordinary differential equations, has
been used to effectively capture the temporal behavior of different biochemical components …

An efficient and robust sampler for Bayesian inference: Transitional ensemble Markov chain Monte Carlo

A Lye, A Cicirello, E Patelli - Mechanical Systems and Signal Processing, 2022 - Elsevier
Bayesian inference is a popular approach towards parameter identification in engineering
problems. Such technique would involve iterative sampling methods which are often robust …

Some models are useful, but how do we know which ones? Towards a unified Bayesian model taxonomy

PC Bürkner, M Scholz, ST Radev - Statistic Surveys, 2023 - projecteuclid.org
Probabilistic (Bayesian) modeling has experienced a surge of applications in almost all
quantitative sciences and industrial areas. This development is driven by a combination of …

Phase tipping: how cyclic ecosystems respond to contemporary climate

H Alkhayuon, RC Tyson… - Proceedings of the …, 2021 - royalsocietypublishing.org
We identify the phase of a cycle as a new critical factor for tipping points (critical transitions)
in cyclic systems subject to time-varying external conditions. As an example, we consider …

[HTML][HTML] Inferring surface energy fluxes using drone data assimilation in large eddy simulations

N Pirk, K Aalstad, S Westermann… - Atmospheric …, 2022 - amt.copernicus.org
Spatially representative estimates of surface energy exchange from field measurements are
required for improving and validating Earth system models and satellite remote sensing …

Generic generation of noise-driven chaos in stochastic time delay systems: Bridging the gap with high-end simulations

MD Chekroun, I Koren, H Liu, H Liu - Science advances, 2022 - science.org
Nonlinear time delay systems produce inherently delay-induced periodic oscillations, which
are, however, too idealistic compared to observations. We exhibit a unified stochastic …

Predicting and Reconstructing Aerosol–Cloud–Precipitation Interactions with Physics-Informed Neural Networks

AV Hu, ZJ Kabala - Atmosphere, 2023 - mdpi.com
Interactions between clouds, aerosol, and precipitation are crucial aspects of weather and
climate. The simple Koren–Feingold conceptual model is important for providing deeper …

Improvement of the ocean mixed layer model via large-eddy simulation and inverse estimation

Y Choi, Y Noh, N Hirose… - Journal of Atmospheric and …, 2022 - journals.ametsoc.org
The ocean mixed layer model (OMLM) is improved using the large-eddy simulation (LES)
and the inverse estimation method. A comparison of OMLM (Noh model) and LES results …

Top‐Down Approaches to the Study of Cloud Systems

G Feingold, I Koren - Fast Processes in Large‐Scale …, 2023 - Wiley Online Library
We approach the problem of convection and clouds using a “top‐down view” that focuses on
system‐wide behavior and emergent phenomena. We distinguish this from the traditional …

[PDF][PDF] Phase-sensitive tipping: How cyclic ecosystems respond to contemporary climate

H Alkhayuon, RC Tyson… - arXiv preprint arXiv …, 2021 - researchgate.net
We identify the phase of a cycle as a new critical factor for tipping points (critical transitions)
in cyclic systems subject to time-varying external conditions. As an example, we consider …