The subsystem quantum chemistry program Serenity

N Niemeyer, P Eschenbach… - Wiley …, 2023 - Wiley Online Library
Abstract SERENITY [J Comput Chem. 2018; 39: 788–798] is an open‐source quantum
chemistry software that provides an extensive development platform focused on quantum …

Towards a pair natural orbital coupled cluster method for excited states

AK Dutta, F Neese, R Izsák - The Journal of Chemical Physics, 2016 - pubs.aip.org
The use of back-transformed pair natural orbitals in the calculation of excited state energies,
ionization potentials, and electron affinities is investigated within the framework of equation …

Photodynamics in Complex Environments: Ab Initio Multiple Spawning Quantum Mechanical/Molecular Mechanical Dynamics

AM Virshup, C Punwong, TV Pogorelov… - The Journal of …, 2009 - ACS Publications
Our picture of reactions on electronically excited states has evolved considerably in recent
years, due to advances in our understanding of points of degeneracy between different …

[HTML][HTML] Dalton Project: A Python platform for molecular-and electronic-structure simulations of complex systems

JMH Olsen, S Reine, O Vahtras, E Kjellgren… - The Journal of …, 2020 - pubs.aip.org
The Dalton Project provides a uniform platform access to the underlying full-fledged
quantum chemistry codes Dalton and LSDalton as well as the PyFraME package for …

Quantum mechanical and molecular mechanics modeling of membrane-embedded rhodopsins

MN Ryazantsev, DM Nikolaev, AV Struts… - The Journal of Membrane …, 2019 - Springer
Computational chemistry provides versatile methods for studying the properties and
functioning of biological systems at different levels of precision and at different time scales …

Photoisomerization of model retinal chromophores: insight from quantum monte carlo and multiconfigurational perturbation theory

O Valsson, C Filippi - Journal of Chemical Theory and …, 2010 - ACS Publications
We present a systematic investigation of the structural relaxation in the excited state of
model retinal chromophores in the gas phase using the complete-active-space self …

Benchmark and performance of long-range corrected time-dependent density functional tight binding (LC-TD-DFTB) on rhodopsins and light-harvesting complexes

BM Bold, M Sokolov, S Maity, M Wanko… - Physical Chemistry …, 2020 - pubs.rsc.org
The chromophores of rhodopsins (Rh) and light-harvesting (LH) complexes still represent a
major challenge for a quantum chemical description due to their size and complex electronic …

Theoretical studies on the color-tuning mechanism in retinal proteins

K Fujimoto, S Hayashi, J Hasegawa… - Journal of chemical …, 2007 - ACS Publications
The excited states of the three retinal proteins, bovine rhodopsin (Rh), bacteriorhodopsin
(bR), and sensory rhodopsin II (sRII) were studied using the symmetry-adapted cluster …

Electrostatic control of the photoisomerization efficiency and optical properties in visual pigments: on the role of counterion quenching

G Tomasello, G Olaso-Gonzalez, P Altoe… - Journal of the …, 2009 - ACS Publications
Hybrid QM (CASPT2//CASSCF/6− 31G*)/MM (Amber) computations have been used to map
the photoisomerization path of the retinal chromophore in Rhodopsin and explore the …

Excited states of biological chromophores studied using many-body perturbation theory: Effects of resonant-antiresonant coupling and dynamical screening

Y Ma, M Rohlfing, C Molteni - Physical Review B—Condensed Matter and …, 2009 - APS
The excited states of model chromophores of the photoactive yellow protein and of
rhodopsin are studied using ab initio many-body perturbation theory (within the GW …