Phage λ—new insights into regulatory circuits

G Węgrzyn, K Licznerska, A Węgrzyn - Advances in Virus Research, 2012 - Elsevier
Bacteriophage λ, rediscovered in the early 1950s, has served as a model in molecular
biology studies for decades. Although currently more complex organisms and more …

Respiratory syncytial virus matrix protein-chromatin association is key to transcriptional inhibition in infected cells

HM Li, R Ghildyal, M Hu, KC Tran, LM Starrs, J Mills… - Cells, 2021 - mdpi.com
The morbidity and mortality caused by the globally prevalent human respiratory pathogen
respiratory syncytial virus (RSV) approaches that world-wide of influenza. We previously …

[HTML][HTML] Qualitatively distinct phenotypes in the design space of biochemical systems

MA Savageau, RA Fasani - FEBS letters, 2009 - Elsevier
Although characterization of the genotype has undergone revolutionary advances as a
result of the successful genome projects, the chasm between our understanding of a fully …

Transcription-Factor-Mediated DNA Looping Probed by High-Resolution, Single-Molecule Imaging in Live E. coli Cells

Z Hensel, X Weng, AC Lagda, J Xiao - PLoS biology, 2013 - journals.plos.org
DNA looping mediated by transcription factors plays critical roles in prokaryotic gene
regulation. The “genetic switch” of bacteriophage λ determines whether a prophage stays …

DNA looping provides stability and robustness to the bacteriophage λ switch

MJ Morelli, PR Ten Wolde… - Proceedings of the …, 2009 - National Acad Sciences
The bistable gene regulatory switch controlling the transition from lysogeny to lysis in
bacteriophage λ presents a unique challenge to quantitative modeling. Despite extensive …

Rule-based programming for integrative biological modeling: Application to the modeling of the λ phage genetic switch

O Michel, A Spicher, JL Giavitto - Natural Computing, 2009 - Springer
Abstract Systems biology aims at integrating processes at various time and spatial scales
into a single and coherent formal description to allow computer modeling. In this context, we …

Stochastic probability landscape model for switching efficiency, robustness, and differential threshold for induction of genetic circuit in phage λ

Y Cao, HM Lu, J Liang - … Conference of the IEEE Engineering in …, 2008 - ieeexplore.ieee.org
The genetic switch of phage lambda provides a paradigm for studying developmental
biology and cell fate. Although there have been numerous experimental and theoretical …

Entropy production rate changes in lysogeny/lysis switch regulation of bacteriophage lambda

H Ding, LF Luo, H Lin - Communications in Theoretical Physics, 2011 - iopscience.iop.org
According to the chemical kinetic model of lysogeny/lysis switch in Escherichia coli (E. coli)
infected by bacteriophage λ, the entropy production rates of steady states are calculated …

A simplified model for lysogenic regulation through DNA looping

LM Anderson, H Yang - … Conference of the IEEE Engineering in …, 2008 - ieeexplore.ieee.org
The lysogenic state of bacteriophage lambda has been a key model for understanding gene
regulation. A single protein, CI repressor, maintains this state by blocking gene expression …

[PDF][PDF] Respiratory syncytial virus matrix proteinchromatin association is key to transcriptional inhibition in infected cells. Cells. 2021; 10

HM Li, R Ghildyal, M Hu, KC Tran, LM Starrs, J Mills… - 2021 - academia.edu
The morbidity and mortality caused by the globally prevalent human respiratory pathogen
respiratory syncytial virus (RSV) approaches that world-wide of influenza. We previously …