Recent advances in machine learning-based models for prediction of antiviral peptides

F Ali, H Kumar, W Alghamdi, FA Kateb… - Archives of Computational …, 2023 - Springer
Viruses have killed and infected millions of people across the world. It causes several
chronic diseases like COVID-19, HIV, and hepatitis. To cope with such diseases and virus …

Comparative analysis of the existing methods for prediction of antifreeze proteins

A Khan, J Uddin, F Ali, A Banjar, A Daud - Chemometrics and Intelligent …, 2023 - Elsevier
Antifreeze proteins (AFPs) are found in different living organisms like plants, insects, and
fish. AFPs avoid the formation of ice crystals in these organisms and make them able to …

Deepstacked-AVPs: predicting antiviral peptides using tri-segment evolutionary profile and word embedding based multi-perspective features with deep stacking …

S Akbar, A Raza, Q Zou - BMC bioinformatics, 2024 - Springer
Background Viral infections have been the main health issue in the last decade. Antiviral
peptides (AVPs) are a subclass of antimicrobial peptides (AMPs) with substantial potential to …

AFP-SPTS: an accurate prediction of antifreeze proteins using sequential and pseudo-tri-slicing evolutionary features with an extremely randomized tree

A Khan, J Uddin, F Ali, H Kumar… - Journal of Chemical …, 2023 - ACS Publications
The development of intracellular ice in the bodies of cold-blooded living organisms may
cause them to die. These species yield antifreeze proteins (AFPs) to live in subzero …

BiCaps-DBP: Predicting DNA-binding proteins from protein sequences using Bi-LSTM and a 1D-capsule network

MKN Mursalim, TLER Mengko, R Hertadi… - Computers in Biology …, 2023 - Elsevier
Predicting DNA-binding proteins (DBPs) based solely on primary sequences is one of the
most challenging problems in genome annotation. DBPs play a crucial role in various …

DBP-DeepCNN: prediction of DNA-binding proteins using wavelet-based denoising and deep learning

F Ali, H Kumar, S Patil, A Ahmed, A Banjar… - … and Intelligent Laboratory …, 2022 - Elsevier
DNA-binding proteins (DBPs) are highly concerned with several types of cancers (lung,
breast, and liver), other fatal diseases (AIDS/HIV, asthma), and are used in the designing of …

Target-DBPPred: an intelligent model for prediction of DNA-binding proteins using discrete wavelet transform based compression and light eXtreme gradient boosting

F Ali, H Kumar, S Patil, K Kotecha, A Banjar… - Computers in Biology …, 2022 - Elsevier
DNA-protein interaction is a critical biological process that performs influential activities,
including DNA transcription and recombination. DBPs (DNA-binding proteins) are closely …

Prediction of antifreeze proteins using machine learning

A Khan, J Uddin, F Ali, A Ahmad, O Alghushairy… - Scientific Reports, 2022 - nature.com
Living organisms including fishes, microbes, and animals can live in extremely cold weather.
To stay alive in cold environments, these species generate antifreeze proteins (AFPs), also …

Deep-AGP: Prediction of angiogenic protein by integrating two-dimensional convolutional neural network with discrete cosine transform

F Ali, W Alghamdi, AO Almagrabi, O Alghushairy… - International Journal of …, 2023 - Elsevier
Angiogenic proteins (AGPs) play a primary role in the formation of new blood vessels from
pre-existing ones. AGPs have diverse applications in cancer, including serving as …

Deep-GHBP: improving prediction of Growth Hormone-binding proteins using deep learning model

F Ali, H Kumar, S Patil, A Ahmad, A Babour… - … Signal Processing and …, 2022 - Elsevier
Growth hormone-binding proteins (GHBPs) are carrier proteins that interact with other
growth hormone proteins in a selective and non-covalent fashion. GHBPs perform significant …