Metabolic and biogeochemical consequences of viral infection in aquatic ecosystems

AE Zimmerman, C Howard-Varona… - Nature Reviews …, 2020 - nature.com
Ecosystems are controlled by 'bottom-up'(resources) and 'top-down'(predation) forces. Viral
infection is now recognized as a ubiquitous top-down control of microbial growth across …

Next-generation physiology approaches to study microbiome function at single cell level

R Hatzenpichler, V Krukenberg, RL Spietz… - Nature Reviews …, 2020 - nature.com
The function of cells in their native habitat often cannot be reliably predicted from genomic
data or from physiology studies of isolates. Traditional experimental approaches to study the …

Metagenomic tools in microbial ecology research

N Taş, AEE de Jong, Y Li, G Trubl, Y Xue… - Current Opinion in …, 2021 - Elsevier
Ability to directly sequence DNA from the environment permanently changed microbial
ecology. Here, we review the new insights to microbial life gleaned from the applications of …

Permafrost as a potential pathogen reservoir

R Wu, G Trubl, N Taş, JK Jansson - One Earth, 2022 - cell.com
The Arctic is currently warming at unprecedented rates because of global climate change,
resulting in thawing of large tracts of permafrost soil. A great challenge is understanding the …

Methane-derived carbon flows into host–virus networks at different trophic levels in soil

S Lee, ET Sieradzki, AM Nicolas… - Proceedings of the …, 2021 - National Acad Sciences
The concentration of atmospheric methane (CH4) continues to increase with microbial
communities controlling soil–atmosphere fluxes. While there is substantial knowledge of the …

Integrating viral metagenomics into an ecological framework

P Sommers, A Chatterjee, A Varsani… - Annual review of …, 2021 - annualreviews.org
Viral metagenomics has expanded our knowledge of the ecology of uncultured viruses,
within both environmental (eg, terrestrial and aquatic) and host-associated (eg, plants and …

Visualizing active viral infection reveals diverse cell fates in synchronized algal bloom demise

F Vincent, U Sheyn, Z Porat… - Proceedings of the …, 2021 - National Acad Sciences
Marine viruses are the most abundant biological entity in the ocean and are considered as
major evolutionary drivers of microbial life [CA Suttle, Nat. Rev. Microbiol. 5, 801–812 …

Subcellular chemical imaging: new avenues in cell biology

J Decelle, G Veronesi, B Gallet, H Stryhanyuk… - Trends in cell …, 2020 - cell.com
To better understand the physiology and acclimation capability of the cell, one of the great
challenges of the future is to access the interior of a cell and unveil its chemical landscape …

Activity-based cell sorting reveals responses of uncultured archaea and bacteria to substrate amendment

NJ Reichart, ZJ Jay, V Krukenberg, AE Parker… - The ISME …, 2020 - academic.oup.com
Metagenomic studies have revolutionized our understanding of the metabolic potential of
uncultured microorganisms in various ecosystems. However, many of these genomic …

Viral infection in the ocean—A journey across scales

F Vincent, A Vardi - PLoS biology, 2023 - journals.plos.org
Viruses are the most abundant biological entity in the ocean and infect a wide range of
microbial life across bacteria, archaea, and eukaryotes. In this essay, we take a journey …