Targeting RNA with small molecules

JR Thomas, PJ Hergenrother - Chemical reviews, 2008 - ACS Publications
The recently discovered functions of RNA dramatically expand the cellular roles for this
macromolecule. RNA can no longer be viewed as a passive element, working simply as an …

Sweet antibiotics–the role of glycosidic residues in antibiotic and antitumor activity and their randomization

V Křen, T Řezanka - FEMS microbiology reviews, 2008 - academic.oup.com
A large number of antibiotics are glycosides. In numerous cases the glycosidic residues are
crucial to their activity; sometimes, glycosylation only improves their pharmacokinetic …

Chemical countermeasures for the control of bacterial biofilms: effective compounds and promising targets

DJ Musk Jr, PJ Hergenrother - Current medicinal chemistry, 2006 - ingentaconnect.com
Chemical Countermeasures for the Control of Bacterial Biofilms: Effective Compounds and
Promising Targets Page 1 Current Medicinal Chemistry, 2006, 13, 2163-2177 2163 …

Frameworks for targeting RNA with small molecules

AU Juru, AE Hargrove - Journal of Biological Chemistry, 2021 - ASBMB
Since the characterization of mRNA in 1961, our understanding of the roles of RNA
molecules has significantly grown. Beyond serving as a link between DNA and proteins …

Size-specific ligands for RNA hairpin loops

JR Thomas, X Liu, PJ Hergenrother - Journal of the American …, 2005 - ACS Publications
The targeting of one mRNA in the transcriptome requires small molecules that bind with
substantial affinity and specificity. As such, compounds with specificity for individual RNA …

2-Deoxystreptamine: central scaffold of aminoglycoside antibiotics

GF Busscher, FPJT Rutjes, FL Van Delft - Chemical reviews, 2005 - ACS Publications
A key structural feature of the aminoglycoside antibiotics is a 1, 3-diaminocyclohexanetriol
termed streptamine or, in cases where the 2-hydroxy function is deoxygenated as in most …

Neomycin− neomycin dimer: an all-carbohydrate scaffold with high affinity for AT-rich DNA duplexes

S Kumar, L Xue, DP Arya - Journal of the American Chemical …, 2011 - ACS Publications
A dimeric neomycin− neomycin conjugate 3 with a flexible linker, 2, 2′-(ethylenedioxy) bis
(ethylamine), has been synthesized and characterized. Dimer 3 can selectively bind to AT …

pH-mediated fluorescence and G-quadruplex binding of amido phthalocyanines

J Alzeer, NW Luedtke - Biochemistry, 2010 - ACS Publications
A new family of G-quadruplex ligands termed “amido phthalocyanines”(APcs) was
synthesized by reacting variable amino acids with tetraamino zinc phthalocyanine. Variation …

Aminoglycosides: molecular insights on the recognition of RNA and aminoglycoside mimics

M Chittapragada, S Roberts… - … in medicinal chemistry, 2009 - journals.sagepub.com
RNA is increasingly recognized for its significant functions in biological systems and has
recently become an important molecular target for therapeutics development …

An evolved RNA recognition motif that suppresses HIV-1 Tat/TAR-dependent transcription

DW Crawford, BD Blakeley, PH Chen… - ACS chemical …, 2016 - ACS Publications
Potent and selective recognition and modulation of disease-relevant RNAs remain a
daunting challenge. We previously examined the utility of the U1A N-terminal RNA …