Helicoidal Peyrard–Bishop model of DNA dynamics

S Zdravković - Journal of Nonlinear Mathematical Physics, 2011 - Taylor & Francis
A nonlinear model describing DNA dynamics, called helicoidal Peyrard–Bishop model, is
described. It is shown that the model can explain a local opening of a DNA helix during …

A review on nonlinear DNA physics

D Chevizovich, D Michieletto… - Royal Society …, 2020 - royalsocietypublishing.org
The study and the investigation of structural and dynamical properties of complex systems
have attracted considerable interest among scientists in general and physicists and …

[HTML][HTML] Mode conversions and molecular forms of breathers under parameter control

X Liu, H Zhang, Y Yan, W Liu - Physics Letters A, 2023 - Elsevier
In this paper, the optical breather and its molecular form in optical fiber systems are
considered as the main research object. Mode conversions and interactions between …

Bubble solitons in an inhomogeneous, helical DNA molecular chain with flexible strands

M Daniel, M Vanitha - Physical Review E—Statistical, Nonlinear, and Soft …, 2011 - APS
Base pair opening in an inhomogeneous, DNA double helical molecular chain with flexible
strands is investigated by studying its internal dynamics. For the study, a generalized model …

Stationary solitary and kink solutions in the helicoidal Peyrard-Bishop model of DNA molecule

S Zdravković, D Chevizovich, AN Bugay… - … Journal of Nonlinear …, 2019 - pubs.aip.org
We study nonlinear dynamics of the DNA molecule relying on a helicoidal Peyrard–Bishop
model. We look for traveling wave solutions and show that a continuum approximation …

[HTML][HTML] Dynamics of molecules in torsional DNA exposed to microwave and possible impact on its deformation: stability analysis

M Tantawy, HI Abdel-Gawad - The European Physical Journal Plus, 2024 - Springer
In this work, we explore the dynamics of molecules in torsionally stressed DNA subjected to
periodic external forces, specifically microwave radiation. Our approach involves …

Description of DNA molecular motion for nanotechnology applications

F Awaja, EA Wakelin, J Sage, A Altaee - Progress in Materials Science, 2015 - Elsevier
One of the most important quests in modern science is the ability to mimic DNA replication,
this process provides opportunities to vastly improve current technology from data storage to …

Darboux transformation and Hamiltonian structure for the Jaulent–Miodek hierarchy

YS Xue, B Tian, WB Ai, Y Jiang - Applied Mathematics and Computation, 2012 - Elsevier
Starting from the Jaulent–Miodek spectral problem, we derive the associated hierarchy of
nonlinear evolution equations in this paper. It is shown that this hierarchy is completely …

Collective coordinate variable for soliton-potential system in sine-Gordon model

K Javidan - Journal of mathematical physics, 2010 - pubs.aip.org
A collective coordinate variable for adding a space dependent potential to the sine-Gordon
model is presented. Interaction of solitons with a delta function potential barrier and also a …

DNA-RNA transcription as an impact of viscosity

S Zdravković, MV Satarić, L Hadžievski - Chaos: An Interdisciplinary …, 2010 - pubs.aip.org
The impact of viscosity on DNA dynamics is studied both analytically and numerically. It is
assumed that the viscosity exists at the segments where DNA molecule is surrounded by …