The Human Pangenome Project: a global resource to map genomic diversity

T Wang, L Antonacci-Fulton, K Howe, HA Lawson… - Nature, 2022 - nature.com
The human reference genome is the most widely used resource in human genetics and is
due for a major update. Its current structure is a linear composite of merged haplotypes from …

From GWAS to gene: transcriptome-wide association studies and other methods to functionally understand GWAS discoveries

B Li, MD Ritchie - Frontiers in genetics, 2021 - frontiersin.org
Since their inception, genome-wide association studies (GWAS) have identified more than a
hundred thousand single nucleotide polymorphism (SNP) loci that are associated with …

ACE2 expression is increased in the lungs of patients with comorbidities associated with severe COVID-19

BGG Pinto, AER Oliveira, Y Singh… - The Journal of …, 2020 - academic.oup.com
Patients who died from COVID-19 often had comorbidities, such as hypertension, diabetes,
and chronic obstructive lung disease. Although angiotensin-converting enzyme 2 (ACE2) is …

Inhibition of nonalcoholic fatty liver disease in mice by selective inhibition of mTORC1

BS Gosis, S Wada, C Thorsheim, K Li, S Jung… - Science, 2022 - science.org
Nonalcoholic fatty liver disease (NAFLD) and nonalcoholic steatohepatitis (NASH) remain
without effective therapies. The mechanistic target of rapamycin complex 1 (mTORC1) …

hTFtarget: a comprehensive database for regulations of human transcription factors and their targets

Q Zhang, W Liu, HM Zhang, GY Xie… - Genomics …, 2020 - academic.oup.com
Transcription factors (TFs) as key regulators play crucial roles in biological processes. The
identification of TF–target regulatory relationships is a key step for revealing functions of TFs …

WashU epigenome browser update 2022

D Li, D Purushotham, JK Harrison, S Hsu… - Nucleic acids …, 2022 - academic.oup.com
Abstract WashU Epigenome Browser (https://epigenomegateway. wustl. edu/browser/) is a
web-based genomic data exploration tool that provides visualization, integration, and …

[HTML][HTML] Integrative analysis of 111 reference human epigenomes

A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen… - Nature, 2015 - nature.com
The reference human genome sequence set the stage for studies of genetic variation and its
association with human disease, but epigenomic studies lack a similar reference. To …

Transposable elements drive widespread expression of oncogenes in human cancers

HS Jang, NM Shah, AY Du, ZZ Dailey, EC Pehrsson… - Nature …, 2019 - nature.com
Transposable elements (TEs) are an abundant and rich genetic resource of regulatory
sequences,–. Cryptic regulatory elements within TEs can be epigenetically reactivated in …

Prediction of histone post-translational modification patterns based on nascent transcription data

Z Wang, AG Chivu, LA Choate, EJ Rice, DC Miller… - Nature …, 2022 - nature.com
The role of histone modifications in transcription remains incompletely understood. Here, we
examine the relationship between histone modifications and transcription using …

The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions

Y Wang, F Song, B Zhang, L Zhang, J Xu, D Kuang… - Genome biology, 2018 - Springer
Here, we introduce the 3D Genome Browser, http://3dgenome. org, which allows users to
conveniently explore both their own and over 300 publicly available chromatin interaction …