A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses

A Hakimzadeh, A Abdala Asbun… - Molecular Ecology …, 2024 - Wiley Online Library
Environmental DNA (eDNA) metabarcoding has gained growing attention as a strategy for
monitoring biodiversity in ecology. However, taxa identifications produced through …

Is the metabarcoding ripe enough to be applied to the authentication of foodstuff of animal origin? A systematic review

A Giusti, C Malloggi, G Magagna… - … Reviews in Food …, 2024 - Wiley Online Library
Food authentication using molecular techniques is of great importance to fight food fraud.
Metabarcoding, based on the next‐generation sequencing (NGS) technologies, allowing …

[图书][B] A practical guide to DNA-based methods for biodiversity assessment.

K Bruce, RC Blackman, SJ Bourlat, M Hellström… - 2021 - repository.oceanbestpractices.org
This book represents a synthesis of knowledge and best practice in the field of DNA-based
biomonitoring at the time of writing. It has been written with end-users of molecular tools in …

Identification of plastic-associated species in the Mediterranean Sea using DNA metabarcoding with Nanopore MinION

K Davidov, E Iankelevich-Kounio, I Yakovenko… - Scientific reports, 2020 - nature.com
Plastic debris in the ocean form a new ecosystem, termed 'plastisphere', which hosts a
variety of marine organisms. Recent studies implemented DNA metabarcoding to …

Speeding up the detection of invasive bivalve species using environmental DNA: A Nanopore and Illumina sequencing comparison

B Egeter, J Verissimo, M Lopes‐Lima… - Molecular Ecology …, 2022 - Wiley Online Library
Traditional detection of aquatic invasive species via morphological identification is often time‐
consuming and can require a high level of taxonomic expertise, leading to delayed …

Nanopore short‐read sequencing: A quick, cost‐effective and accurate method for DNA metabarcoding

AL van der Reis, LE Beckley, MP Olivar… - Environmental …, 2023 - Wiley Online Library
Dietary and predator–prey studies are more frequently relying on DNA metabarcoding
methods, typically achieving results that have a better taxonomic resolution (eg, species …

New-generation sequencing technology in diagnosis of fungal plant pathogens: a dream comes true?

M Aragona, A Haegi, MT Valente, L Riccioni, L Orzali… - Journal of Fungi, 2022 - mdpi.com
The fast and continued progress of high-throughput sequencing (HTS) and the drastic
reduction of its costs have boosted new and unpredictable developments in the field of plant …

Network analysis with either Illumina or MinION reveals that detecting vertebrate species requires metabarcoding of iDNA from a diverse fly community

A Srivathsan, RK Loh, EJ Ong, L Lee, Y Ang… - Molecular …, 2023 - Wiley Online Library
DNA obtained from invertebrates (iDNA) can be metabarcoded in order to survey vertebrate
communities. However, little attention has been paid to the interaction between the …

Takeaways from mobile DNA barcoding with BentoLab and MinION

JJM Chang, YCA Ip, CSL Ng, D Huang - Genes, 2020 - mdpi.com
Since the release of the MinION sequencer in 2014, it has been applied to great effect in the
remotest and harshest of environments, and even in space. One of the most common …

Real-time on-site diagnosis of quarantine pathogens in plant tissues by nanopore-based sequencing

L Marcolungo, A Passera, S Maestri, E Segala… - Pathogens, 2022 - mdpi.com
Rapid and sensitive assays for the identification of plant pathogens are necessary for the
effective management of crop diseases. The main limitation of current diagnostic testing is …