Puzzling over MDM4–p53 network

F Mancini, G Di Conza, O Monti, A Macchiarulo… - The international journal …, 2010 - Elsevier
MDM4 (also called MDMX) has been initially identified as p53 inhibitor. Subsequent data
have reinforced this role pointing to the requirement for MDM4 repressive activity on p53 for …

Guidelines for visualizing and annotating rule-based models

LA Chylek, B Hu, ML Blinov, T Emonet… - Molecular …, 2011 - pubs.rsc.org
Rule-based modeling provides a means to represent cell signaling systems in a way that
captures site-specific details of molecular interactions. For rule-based models to be more …

Modelling the response of FOXO transcription factors to multiple post-translational modifications made by ageing-related signalling pathways

GR Smith, DP Shanley - PloS one, 2010 - journals.plos.org
FOXO transcription factors are an important, conserved family of regulators of cellular
processes including metabolism, cell-cycle progression, apoptosis and stress resistance …

On the interaction mechanisms of a p53 peptide and nutlin with the MDM2 and MDMX proteins: a Brownian dynamics study

K ElSawy, CS Verma, TL Joseph, DP Lane, R Twarock… - Cell Cycle, 2013 - Taylor & Francis
The interaction of p53 with its regulators MDM2 and MDMX plays a major role in regulating
the cell cycle. Inhibition of this interaction has become an important therapeutic strategy in …

Inhibition of the mTOR pathway and reprogramming of protein synthesis by MDM4 reduce ovarian cancer metastatic properties

R Lucà, MR Assenza, F Maiullari, L Pieroni… - Cell Death & …, 2021 - nature.com
Epithelial ovarian cancer (EOC) is a highly heterogeneous disease with a high death rate
mainly due to the metastatic spread. The expression of MDM4, a well-known p53-inhibitor, is …

Biosystem models, generated from a complex rule/reaction/influence network and from two functionality prototypes

M Varga, A Prokop, B Csukas - BioSystems, 2017 - Elsevier
In this work we have further developed the Direct Computer Mapping (DCM) based
modelling and simulation methodology. A unified, transition-based representation of …

A formal MIM specification and tools for the common exchange of MIM diagrams: an XML-Based format, an API, and a validation method

A Luna, EI Karac, M Sunshine, L Chang, R Nussinov… - BMC …, 2011 - Springer
Abstract Background The Molecular Interaction Map (MIM) notation offers a standard set of
symbols and rules on their usage for the depiction of cellular signaling network diagrams …

Modeling the p53-Mdm2 Dynamics Triggered by DNA Damage

Z Zhu, Y Xu, X Liu, S Ruan - Journal of Nonlinear Science, 2024 - Springer
In this paper, a p53-Mdm2 network model with Michaelis–Menten function involved in DNA
damage repair is studied by using the dynamical system approach. Detailed bifurcations of …

MDM4 enhances p53 stability by promoting an active conformation of the protein upon DNA damage

G Di Conza, F Mancini, M Buttarelli, A Pontecorvi… - Cell Cycle, 2012 - Taylor & Francis
Stabilization of p53 protein is an important step in the activation of its function. p53 levels are
regulated by ubiquitin-dependent and-independent degradation pathways. MDM4 (MDMX) …

Direct computer mapping of executable multiscale hybrid process architectures

B Csukás, M Varga, S Balogh - Proceedings of the 2011 Summer …, 2011 - dl.acm.org
The Direct Computer Mapping based generation of executable multiscale hybrid process
architectures is described in the paper. We show that process models can be generated …