Twelve quick steps for genome assembly and annotation in the classroom

H Jung, T Ventura, JS Chung, WJ Kim… - PLoS computational …, 2020 - journals.plos.org
Eukaryotic genome sequencing and de novo assembly, once the exclusive domain of well-
funded international consortia, have become increasingly affordable, thus fitting the budgets …

The changing face of genome assemblies: Guidance on achieving high‐quality reference genomes

A Whibley, JL Kelley, SR Narum - 2021 - Wiley Online Library
The quality of genome assemblies has improved rapidly in recent years due to continual
advances in sequencing technology, assembly approaches, and quality control. In the field …

Complete genomes of the eukaryotic poultry parasite Histomonas meleagridis: linking sequence analysis with virulence / attenuation

N Palmieri, M de Jesus Ramires, M Hess, I Bilic - BMC genomics, 2021 - Springer
Background Histomonas meleagridis is a protozoan parasite and the causative agent of
histomonosis, an important poultry disease whose significance is underlined by the absence …

A CNN based m5c RNA methylation predictor

I Aslam, S Shah, S Jabeen, M ELAffendi… - Scientific Reports, 2023 - nature.com
Post-transcriptional modifications of RNA play a key role in performing a variety of biological
processes, such as stability and immune tolerance, RNA splicing, protein translation and …

Chromosome-Level Assembly of the Southern Rock Bream (Oplegnathus fasciatus) Genome Using PacBio and Hi-C Technologies

Y Bai, J Gong, Z Zhou, B Li, J Zhao, Q Ke, X Zou… - Frontiers in …, 2021 - frontiersin.org
The Rock Bream (Oplegnathus fasciatus) is an economically important rocky reef fish of the
Northwest Pacific Ocean. In recent years, it has been cultivated as an important edible fish in …

Seeing through the forest: The gaze path to purchase

BK Behe, PT Huddleston, KL Childs, J Chen, IS Muraro - Plos one, 2020 - journals.plos.org
Eye tracking studies have analyzed the relationship between visual attention to point of
purchase marketing elements (price, signage, etc.) and purchase intention. Our study is the …

[HTML][HTML] NIFtHool: an informatics program for identification of NifH proteins using deep neural networks

JD Suquilanda-Pesántez, EDA Salazar… - …, 2022 - ncbi.nlm.nih.gov
Atmospheric nitrogen fixation carried out by microorganisms has environmental and
industrial importance, related to the increase of soil fertility and productivity. The present …

CStone: A de novo transcriptome assembler for short-read data that identifies non-chimeric contigs based on underlying graph structure

R Linheiro, J Archer - PLoS computational biology, 2021 - journals.plos.org
With the exponential growth of sequence information stored over the last decade, including
that of de novo assembled contigs from RNA-Seq experiments, quantification of chimeric …

Genome Size Estimation of Callipogon relictus Semenov (Coleoptera: Cerambycidae), an Endangered Species and a Korea Natural Monument

YS Yu, S Jin, N Cho, J Lim, CH Kim, SG Lee, S Kim… - Insects, 2021 - mdpi.com
Simple Summary The longhorned beetle Calipogon relictus has been considered as a class
I endangered species since 2012 in Korea. In an attempt towards beetle conservation, we …

[PDF][PDF] Sequence Annotation of Edible Fungus Calocybe indica Using Different Bioinformatics Tools

M Zhuang - 2023 - uh-ir.tdl.org
The fruiting body of Calocybe indica, also known as the Milky White Mushroom (MWM), is an
edible fungus widely consumed in South Asia. A notable feature of the MWM, among others …