Intestinal phages interact with bacteria and are involved in human diseases

H Shuwen, D Kefeng - Gut Microbes, 2022 - Taylor & Francis
Phages are the most abundant and diverse biological entities on Earth and exert specific
effects on bacterial hosts. The coexistence of phages and bacteria in the intestinal tract is …

Direct activation of a bacterial innate immune system by a viral capsid protein

T Zhang, H Tamman, K Coppieters't Wallant, T Kurata… - Nature, 2022 - nature.com
Bacteria have evolved diverse immunity mechanisms to protect themselves against the
constant onslaught of bacteriophages,–. Similar to how eukaryotic innate immune systems …

Uncovering new families and folds in the natural protein universe

J Durairaj, AM Waterhouse, T Mets, T Brodiazhenko… - Nature, 2023 - nature.com
We are now entering a new era in protein sequence and structure annotation, with hundreds
of millions of predicted protein structures made available through the AlphaFold database …

Acinetobacter baumannii phages: past, present and future

Q Tu, M Pu, Y Li, Y Wang, M Li, L Song, M Li, X An… - Viruses, 2023 - mdpi.com
Acinetobacter baumannii (A. baumannii) is one of the most common clinical pathogens and
a typical multi-drug resistant (MDR) bacterium. With the increase of drug-resistant A …

A virally encoded tRNA neutralizes the PARIS antiviral defence system

N Burman, S Belukhina, F Depardieu, RA Wilkinson… - Nature, 2024 - nature.com
Viruses compete with each other for limited cellular resources, and some deliver defence
mechanisms that protect the host from competing genetic parasites. The phage …

The structural basis of hyperpromiscuity in a core combinatorial network of type II toxin–antitoxin and related phage defense systems

K Ernits, CK Saha, T Brodiazhenko… - Proceedings of the …, 2023 - National Acad Sciences
Toxin-antitoxin (TA) systems are a large group of small genetic modules found in
prokaryotes and their mobile genetic elements. Type II TAs are encoded as bicistronic (two …

Phages are unrecognized players in the ecology of the oral pathogen Porphyromonas gingivalis

CB Matrishin, EM Haase, FE Dewhirst, JL Mark Welch… - Microbiome, 2023 - Springer
Abstract Background Porphyromonas gingivalis (hereafter “Pg”) is an oral pathogen that has
been hypothesized to act as a keystone driver of inflammation and periodontal disease …

Recent advances and perspectives in nucleotide second messenger signaling in bacteria

R Hengge, M Pruteanu, J Stülke, N Tschowri… - Microlife, 2023 - academic.oup.com
Nucleotide second messengers act as intracellular 'secondary'signals that represent
environmental or cellular cues, ie the 'primary'signals. As such, they are linking sensory …

A single cryptomonad cell harbors a complex community of organelles, bacteria, a phage, and selfish elements

EE George, D Barcytė, G Lax, S Livingston… - Current Biology, 2023 - cell.com
Symbiosis between prokaryotes and microbial eukaryotes (protists) has broadly impacted
both evolution and ecology. Endosymbiosis led to mitochondria and plastids, the latter …

Mechanisms of neutralization of toxSAS from toxin–antitoxin modules

L Dominguez-Molina, T Kurata, A Cepauskas… - Nature Chemical …, 2024 - nature.com
Toxic small alarmone synthetase (toxSAS) enzymes constitute a family of bacterial effectors
present in toxin–antitoxin and secretion systems. toxSASs act through either translation …