RNA structural dynamics as captured by molecular simulations: a comprehensive overview

J Sponer, G Bussi, M Krepl, P Banáš, S Bottaro… - Chemical …, 2018 - ACS Publications
With both catalytic and genetic functions, ribonucleic acid (RNA) is perhaps the most
pluripotent chemical species in molecular biology, and its functions are intimately linked to …

Cracking the code: Reprogramming the genetic script in prokaryotes and eukaryotes to harness the power of noncanonical amino acids

C Jann, S Giofré, R Bhattacharjee, EA Lemke - Chemical Reviews, 2024 - ACS Publications
Over 500 natural and synthetic amino acids have been genetically encoded in the last two
decades. Incorporating these noncanonical amino acids into proteins enables many …

What recent ribosome structures have revealed about the mechanism of translation

TM Schmeing, V Ramakrishnan - Nature, 2009 - nature.com
The high-resolution structures of ribosomal subunits published in 2000 have revolutionized
the field of protein translation. They facilitated the determination and interpretation of …

Crystal Structure of the Eukaryotic 60S Ribosomal Subunit in Complex with Initiation Factor 6

S Klinge, F Voigts-Hoffmann, M Leibundgut… - Science, 2011 - science.org
Protein synthesis in all organisms is catalyzed by ribosomes. In comparison to their
prokaryotic counterparts, eukaryotic ribosomes are considerably larger and are subject to …

Efficient multisite unnatural amino acid incorporation in mammalian cells via optimized pyrrolysyl tRNA synthetase/tRNA expression and engineered eRF1

WH Schmied, SJ Elsässer… - Journal of the …, 2014 - ACS Publications
The efficient, site-specific introduction of unnatural amino acids into proteins in mammalian
cells is an outstanding challenge in realizing the potential of genetic code expansion …

The crystal structure of the ribosome bound to EF-Tu and aminoacyl-tRNA

TM Schmeing, RM Voorhees, AC Kelley, YG Gao… - Science, 2009 - science.org
The ribosome selects a correct transfer RNA (tRNA) for each amino acid added to the
polypeptide chain, as directed by messenger RNA. Aminoacyl-tRNA is delivered to the …

A structural understanding of the dynamic ribosome machine

TA Steitz - Nature reviews Molecular cell biology, 2008 - nature.com
Ribosomes, which are central to protein synthesis and convert transcribed mRNAs into
polypeptide chains, have been the focus of structural and biochemical studies for more than …

Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements

A Korostelev, S Trakhanov, M Laurberg, HF Noller - Cell, 2006 - cell.com
Our understanding of the mechanism of protein synthesis has undergone rapid progress in
recent years as a result of low-resolution X-ray and cryo-EM structures of ribosome …

Fidelity at the molecular level: lessons from protein synthesis

HS Zaher, R Green - Cell, 2009 - cell.com
The faithful and rapid translation of genetic information into peptide sequences is an
indispensable property of the ribosome. The mechanistic understanding of strategies used …

In vitro reconstitution of eukaryotic translation reveals cooperativity between release factors eRF1 and eRF3

EZ Alkalaeva, AV Pisarev, LY Frolova, LL Kisselev… - Cell, 2006 - cell.com
Eukaryotic translation termination is triggered by peptide release factors eRF1 and eRF3.
Whereas eRF1 recognizes all three termination codons and induces hydrolysis of peptidyl …