Signatures of positive selection: from selective sweeps at individual loci to subtle allele frequency changes in polygenic adaptation

W Stephan - Molecular ecology, 2016 - Wiley Online Library
In the past 15 years, numerous methods have been developed to detect selective sweeps
underlying adaptations. These methods are based on relatively simple population genetic …

Controlling for non-independence in comparative analysis of patterns across populations within species

GN Stone, S Nee, J Felsenstein - … Transactions of the …, 2011 - royalsocietypublishing.org
How do we quantify patterns (such as responses to local selection) sampled across multiple
populations within a single species? Key to this question is the extent to which populations …

Bayesian inference of species trees from multilocus data

J Heled, AJ Drummond - Molecular biology and evolution, 2009 - academic.oup.com
Until recently, it has been common practice for a phylogenetic analysis to use a single gene
sequence from a single individual organism as a proxy for an entire species. With …

HUMAN IMPACTS HAVE SHAPED HISTORICAL AND RECENT EVOLUTION IN AEDES AEGYPTI, THE DENGUE AND YELLOW FEVER MOSQUITO

JE Brown, BR Evans, W Zheng, V Obas… - …, 2014 - academic.oup.com
Although anthropogenic impacts are often considered harmful to species, human
modifications to the landscape can actually create novel niches to which other species can …

Bayesian inference of population size history from multiple loci

J Heled, AJ Drummond - BMC evolutionary biology, 2008 - Springer
Background Effective population size (N e) is related to genetic variability and is a basic
parameter in many models of population genetics. A number of methods for inferring current …

Worldwide patterns of genetic differentiation imply multiple 'domestications' of Aedes aegypti, a major vector of human diseases

JE Brown, CS McBride, P Johnson… - … of the Royal …, 2011 - royalsocietypublishing.org
Understanding the processes by which species colonize and adapt to human habitats is
particularly important in the case of disease-vectoring arthropods. The mosquito species …

Cryptic speciation in the cosmopolitan and clonal human pathogenic fungus Aspergillus fumigatus

A Pringle, DM Baker, JL Platt, JP Wares, JP Latge… - …, 2005 - Wiley Online Library
Microbes and other organisms smaller than one to a few millimeters in size are
hypothesized to have global populations, in contrast to the geographically restricted ranges …

Selection on grain shattering genes and rates of rice domestication

LB Zhang, Q Zhu, ZQ Wu, J Ross‐Ibarra… - New …, 2009 - Wiley Online Library
Molecular cloning of major quantitative trait loci (QTLs) responsible for the reduction of rice
grain shattering, a hallmark of cereal domestication, provided opportunities for in‐depth …

Using multilocus sequence data to assess population structure, natural selection, and linkage disequilibrium in wild tomatoes

U Arunyawat, W Stephan… - Molecular Biology and …, 2007 - academic.oup.com
We employed a multilocus approach to examine the effects of population subdivision and
natural selection on DNA polymorphism in 2 closely related wild tomato species (Solanum …

Extensive duplication of the Wolbachia DNA in chromosome four of Drosophila ananassae

L Klasson, N Kumar, R Bromley, K Sieber, M Flowers… - BMC genomics, 2014 - Springer
Background Lateral gene transfer (LGT) from bacterial Wolbachia endosymbionts has been
detected in~ 20% of arthropod and nematode genome sequencing projects. Many of these …