Cloud computing for genomic data analysis and collaboration

B Langmead, A Nellore - Nature Reviews Genetics, 2018 - nature.com
Next-generation sequencing has made major strides in the past decade. Studies based on
large sequencing data sets are growing in number, and public archives for raw sequencing …

[HTML][HTML] 'Big data', Hadoop and cloud computing in genomics

A O'Driscoll, J Daugelaite, RD Sleator - Journal of biomedical informatics, 2013 - Elsevier
Since the completion of the Human Genome project at the turn of the Century, there has
been an unprecedented proliferation of genomic sequence data. A consequence of this is …

Big data: astronomical or genomical?

ZD Stephens, SY Lee, F Faghri, RH Campbell… - PLoS …, 2015 - journals.plos.org
Genomics is a Big Data science and is going to get much bigger, very soon, but it is not
known whether the needs of genomics will exceed other Big Data domains. Projecting to the …

Precise correction of the dystrophin gene in duchenne muscular dystrophy patient induced pluripotent stem cells by TALEN and CRISPR-Cas9

HL Li, N Fujimoto, N Sasakawa, S Shirai, T Ohkame… - Stem cell reports, 2015 - cell.com
Duchenne muscular dystrophy (DMD) is a severe muscle-degenerative disease caused by a
mutation in the dystrophin gene. Genetic correction of patient-derived induced pluripotent …

[HTML][HTML] c-Myc is a universal amplifier of expressed genes in lymphocytes and embryonic stem cells

Z Nie, G Hu, G Wei, K Cui, A Yamane, W Resch… - Cell, 2012 - cell.com
Summary The c-Myc HLH-bZIP protein has been implicated in physiological or pathological
growth, proliferation, apoptosis, metabolism, and differentiation at the cellular, tissue, or …

A framework for variation discovery and genotyping using next-generation DNA sequencing data

MA DePristo, E Banks, R Poplin, KV Garimella… - Nature …, 2011 - nature.com
Recent advances in sequencing technology make it possible to comprehensively catalog
genetic variation in population samples, creating a foundation for understanding human …

FastUniq: A Fast De Novo Duplicates Removal Tool for Paired Short Reads

H Xu, X Luo, J Qian, X Pang, J Song, G Qian, J Chen… - PloS one, 2012 - journals.plos.org
The presence of duplicates introduced by PCR amplification is a major issue in paired short
reads from next-generation sequencing platforms. These duplicates might have a serious …

Genome editing of model oleaginous microalgae Nannochloropsis spp. by CRISPR/Cas9

Q Wang, Y Lu, Y Xin, L Wei, S Huang, J Xu - The Plant Journal, 2016 - Wiley Online Library
Microalgae are promising feedstock for biofuels yet mechanistic probing of their cellular
network and industrial strain development have been hindered by lack of genome‐editing …

A survey of sequence alignment algorithms for next-generation sequencing

H Li, N Homer - Briefings in bioinformatics, 2010 - academic.oup.com
Rapidly evolving sequencing technologies produce data on an unparalleled scale. A central
challenge to the analysis of this data is sequence alignment, whereby sequence reads must …

The impact of next-generation sequencing on genomics

J Zhang, R Chiodini, A Badr, G Zhang - Journal of genetics and genomics, 2011 - Elsevier
This article reviews basic concepts, general applications, and the potential impact of next-
generation sequencing (NGS) technologies on genomics, with particular reference to …