A survey of methods for 3D histology reconstruction

J Pichat, JE Iglesias, T Yousry, S Ourselin… - Medical image analysis, 2018 - Elsevier
Histology permits the observation of otherwise invisible structures of the internal topography
of a specimen. Although it enables the investigation of tissues at a cellular level, it is invasive …

Uneven illumination correction of digital images: A survey of the state-of-the-art

N Dey - Optik, 2019 - Elsevier
The common image related artifacts during image acquisition are noise caused due to
external interference and imbalance in illumination. Uneven illumination correction …

A novel low rank smooth flat-field correction algorithm for hyperspectral microscopy imaging

Y Wang, Y Gu, X Li - IEEE Transactions on Medical Imaging, 2022 - ieeexplore.ieee.org
A flat-field correction method is proposed for multiple measured hyperspectral microscopy
imaging in this paper. As the most crucial preprocessing process in quantitative microscopic …

Box-counting fractal analysis: A primer for the clinician

AL Karperien, HF Jelinek - The fractal geometry of the brain, 2024 - Springer
This chapter lays out the elementary principles of fractal geometry underpinning much of the
rest of this book. It assumes a minimal mathematical background, defines the key principles …

Efficient neural network approximation of robust pca for automated analysis of calcium imaging data

S Han, ES Cho, I Park, K Shin, YG Yoon - … 1, 2021, Proceedings, Part VII 24, 2021 - Springer
Calcium imaging is an essential tool to study the activity of neuronal populations. However,
the high level of background fluorescence in images hinders the accurate identification of …

Combined flat-field and frequency filter approach to correcting artifacts of multichannel two-photon microscopy

T Knapp, N Lima, N Daigle, S Duan… - Journal of …, 2024 - spiedigitallibrary.org
Significance Multiphoton microscopy (MPM) is a useful biomedical imaging tool for its ability
to probe labeled and unlabeled depth-resolved tissue biomarkers at high resolution …

Non-parametric vignetting correction for sparse spatial transcriptomics images

BY Rao, AM Peterson, EK Kandror, S Herrlinger… - … Image Computing and …, 2021 - Springer
Spatial transcriptomics techniques such as STARmap [15] enable the subcellular detection
of RNA transcripts within complex tissue sections. The data from these techniques are …

Fast background removal in 3D fluorescence microscopy images using one-class learning

L Yang, Y Zhang, IH Guldner, S Zhang… - Medical Image Computing …, 2015 - Springer
With the recent advances of optical tissue clearing technology, current imaging modalities
are able to image large tissue samples in 3D with single-cell resolution. However, the …

Automatic detection of necrosis, normoxia and hypoxia in tumors from multimodal cytological images

G Carneiro, T Peng, C Bayer… - 2015 IEEE International …, 2015 - ieeexplore.ieee.org
The efficacy of cancer treatments (eg, radiotherapy, chemotherapy, etc.) has been observed
to critically depend on the proportion of hypoxic regions (ie, a region deprived of adequate …

Regression Based Iterative Illumination Compensation Method for Multi-Focal Whole Slide Imaging System

R Paulik, M Kozlovszky, B Molnár - Sensors, 2021 - mdpi.com
Image quality, resolution and scanning time are critical in digital pathology. In order to create
a high-resolution digital image, the scanner systems execute stitching algorithms to the …