[HTML][HTML] The reductive glycine pathway allows autotrophic growth of Desulfovibrio desulfuricans

I Sánchez-Andrea, IA Guedes, B Hornung… - Nature …, 2020 - nature.com
Six CO 2 fixation pathways are known to operate in photoautotrophic and chemoautotrophic
microorganisms. Here, we describe chemolithoautotrophic growth of the sulphate-reducing …

Conversion of dietary inositol into propionate and acetate by commensal Anaerostipes associates with host health

TPN Bui, L Mannerås-Holm, R Puschmann… - Nature …, 2021 - nature.com
We describe the anaerobic conversion of inositol stereoisomers to propionate and acetate
by the abundant intestinal genus Anaerostipes. A inositol pathway was elucidated by …

Nanodroplet processing platform for deep and quantitative proteome profiling of 10–100 mammalian cells

Y Zhu, PD Piehowski, R Zhao, J Chen, Y Shen… - Nature …, 2018 - nature.com
Nanoscale or single-cell technologies are critical for biomedical applications. However,
current mass spectrometry (MS)-based proteomic approaches require samples comprising a …

Comprehensive multi-omics analysis reveals mitochondrial stress as a central biological hub for spaceflight impact

WA da Silveira, H Fazelinia, SB Rosenthal, EC Laiakis… - Cell, 2020 - cell.com
Spaceflight is known to impose changes on human physiology with unknown molecular
etiologies. To reveal these causes, we used a multi-omics, systems biology analytical …

Supramolecular arrangement of protein in nanoparticle structures predicts nanoparticle tropism for neutrophils in acute lung inflammation

JW Myerson, PN Patel, KM Rubey, ME Zamora… - Nature …, 2022 - nature.com
This study shows that the supramolecular arrangement of proteins in nanoparticle structures
predicts nanoparticle accumulation in neutrophils in acute lung inflammation (ALI). We …

Akkermansia muciniphila uses human milk oligosaccharides to thrive in the early life conditions in vitro

I Kostopoulos, J Elzinga, N Ottman, JT Klievink… - Scientific reports, 2020 - nature.com
Akkermansia muciniphila is a well-studied anaerobic bacterium specialized in mucus
degradation and associated with human health. Because of the structural resemblance of …

Benchmarking of analysis strategies for data-independent acquisition proteomics using a large-scale dataset comprising inter-patient heterogeneity

K Fröhlich, E Brombacher, M Fahrner, D Vogele… - Nature …, 2022 - nature.com
Numerous software tools exist for data-independent acquisition (DIA) analysis of clinical
samples, necessitating their comprehensive benchmarking. We present a benchmark …

In search of a universal method: a comparative survey of bottom-up proteomics sample preparation methods

G Varnavides, M Madern, D Anrather… - Journal of proteome …, 2022 - ACS Publications
Robust, efficient, and reproducible protein extraction and sample processing is a key step for
bottom-up proteomics analyses. While many sample preparation protocols for mass …

Challenges in biomarker discovery with MALDI-TOF MS

J Hajduk, J Matysiak, ZJ Kokot - Clinica Chimica Acta, 2016 - Elsevier
Abstract MALDI-TOF MS technique is commonly used in system biology and clinical studies
to search for new potential markers associated with pathological conditions. Despite …

QCloud: A cloud-based quality control system for mass spectrometry-based proteomics laboratories

C Chiva, R Olivella, E Borràs, G Espadas, O Pastor… - PloS one, 2018 - journals.plos.org
The increasing number of biomedical and translational applications in mass spectrometry-
based proteomics poses new analytical challenges and raises the need for automated …