[HTML][HTML] Sex and gender differences and biases in artificial intelligence for biomedicine and healthcare

D Cirillo, S Catuara-Solarz, C Morey, E Guney… - NPJ digital …, 2020 - nature.com
Precision Medicine implies a deep understanding of inter-individual differences in health
and disease that are due to genetic and environmental factors. To acquire such …

Deep learning in electron microscopy

JM Ede - Machine Learning: Science and Technology, 2021 - iopscience.iop.org
Deep learning is transforming most areas of science and technology, including electron
microscopy. This review paper offers a practical perspective aimed at developers with …

LitCovid: an open database of COVID-19 literature

Q Chen, A Allot, Z Lu - Nucleic acids research, 2021 - academic.oup.com
Since the outbreak of the current pandemic in 2020, there has been a rapid growth of
published articles on COVID-19 and SARS-CoV-2, with about 10 000 new articles added …

The role of machine learning in the understanding and design of materials

SM Moosavi, KM Jablonka, B Smit - Journal of the American …, 2020 - ACS Publications
Developing algorithmic approaches for the rational design and discovery of materials can
enable us to systematically find novel materials, which can have huge technological and …

PubTator central: automated concept annotation for biomedical full text articles

CH Wei, A Allot, R Leaman, Z Lu - Nucleic acids research, 2019 - academic.oup.com
Abstract PubTator Central (https://www. ncbi. nlm. nih. gov/research/pubtator/) is a web
service for viewing and retrieving bioconcept annotations in full text biomedical articles …

Artificial intelligence in action: addressing the COVID-19 pandemic with natural language processing

Q Chen, R Leaman, A Allot, L Luo… - Annual review of …, 2021 - annualreviews.org
The COVID-19 (coronavirus disease 2019) pandemic has had a significant impact on
society, both because of the serious health effects of COVID-19 and because of public …

Performance of multiple pretrained BERT models to automate and accelerate data annotation for large datasets

AS Tejani, YS Ng, Y Xi, JR Fielding… - Radiology: Artificial …, 2022 - pubs.rsna.org
Purpose To develop and evaluate domain-specific and pretrained bidirectional encoder
representations from transformers (BERT) models in a transfer learning task on varying …

LitSuggest: a web-based system for literature recommendation and curation using machine learning

A Allot, K Lee, Q Chen, L Luo, Z Lu - Nucleic acids research, 2021 - academic.oup.com
Searching and reading relevant literature is a routine practice in biomedical research.
However, it is challenging for a user to design optimal search queries using all the keywords …

BioConceptVec: Creating and evaluating literature-based biomedical concept embeddings on a large scale

Q Chen, K Lee, S Yan, S Kim, CH Wei… - PLoS computational …, 2020 - journals.plos.org
A massive number of biological entities, such as genes and mutations, are mentioned in the
biomedical literature. The capturing of the semantic relatedness of biological entities is vital …

A roadmap for the functional annotation of protein families: a community perspective

V de Crécy-Lagard, R Amorin de Hegedus, C Arighi… - 2022 - academic.oup.com
Over the last 25 years, biology has entered the genomic era and is becoming a science of
'big data'. Most interpretations of genomic analyses rely on accurate functional annotations …