Advances and challenges in metatranscriptomic analysis
Sequencing-based analyses of microbiomes have traditionally focused on addressing the
question of community membership and profiling taxonomic abundance through amplicon …
question of community membership and profiling taxonomic abundance through amplicon …
Demystifying emerging bulk RNA-Seq applications: the application and utility of bioinformatic methodology
Significant innovations in next-generation sequencing techniques and bioinformatics tools
have impacted our appreciation and understanding of RNA. Practical RNA sequencing …
have impacted our appreciation and understanding of RNA. Practical RNA sequencing …
[HTML][HTML] Current understanding of plant-microbe interaction through the lenses of multi-omics approaches and their benefits in sustainable agriculture
The success of sustainable agricultural practices has now become heavily dependent on the
interactions between crop plants and their associated microbiome. Continuous …
interactions between crop plants and their associated microbiome. Continuous …
Metatranscriptomics: an approach for retrieving novel eukaryotic genes from polluted and related environments
A Mukherjee, MS Reddy - 3 Biotech, 2020 - Springer
Metatranscriptomics, a subset of metagenomics, provides valuable information about the
whole gene expression profiling of complex microbial communities of an ecosystem …
whole gene expression profiling of complex microbial communities of an ecosystem …
[HTML][HTML] Mapping human pathogens in wastewater using a metatranscriptomic approach
The monitoring of cities' wastewaters for the detection of potentially pathogenic viruses and
bacteria has been considered a priority during the COVID-19 pandemic to monitor public …
bacteria has been considered a priority during the COVID-19 pandemic to monitor public …
Metaomics in clinical laboratory: potential driving force for innovative disease diagnosis
Currently, more and more studies suggested that reductionism was lack of holistic and
integrative view of biological processes, leading to limited understanding of complex …
integrative view of biological processes, leading to limited understanding of complex …
[HTML][HTML] MIntO: a modular and scalable pipeline for microbiome metagenomic and metatranscriptomic data integration
Omics technologies have revolutionized microbiome research allowing the characterization
of complex microbial communities in different biomes without requiring their cultivation. As a …
of complex microbial communities in different biomes without requiring their cultivation. As a …
De novo assembly and annotation of the vaginal metatranscriptome associated with bacterial vaginosis
WK Cho, Y Jo, S Jeong - International Journal of Molecular Sciences, 2022 - mdpi.com
The vaginal microbiome plays an important role in women's health and disease. Here we
reanalyzed 40 vaginal transcriptomes from a previous study of de novo assembly (metaT …
reanalyzed 40 vaginal transcriptomes from a previous study of de novo assembly (metaT …
MOSCA 2.0: A bioinformatics framework for metagenomics, metatranscriptomics and metaproteomics data analysis and visualization
The analysis of meta‐omics data requires the utilization of several bioinformatics tools and
proficiency in informatics. The integration of multiple meta‐omics data is even more …
proficiency in informatics. The integration of multiple meta‐omics data is even more …
Intraintestinal analysis of the functional activity of microbiomes and its application to the common marmoset intestine
M Uehara, T Inoue, M Kominato, S Hase, E Sasaki… - Msystems, 2022 - Am Soc Microbiol
The intestinal microbiome is closely related to host health, and metatranscriptomic analysis
can be used to assess the functional activity of microbiomes by quantifying microbial gene …
can be used to assess the functional activity of microbiomes by quantifying microbial gene …