Extreme learning machines for reverse engineering of gene regulatory networks from expression time series

M Rubiolo, DH Milone, G Stegmayer - Bioinformatics, 2018 - academic.oup.com
Motivation The reconstruction of gene regulatory networks (GRNs) from genes profiles has a
growing interest in bioinformatics for understanding the complex regulatory mechanisms in …

Neural model of gene regulatory network: a survey on supportive meta-heuristics

S Biswas, S Acharyya - Theory in Biosciences, 2016 - Springer
Gene regulatory network (GRN) is produced as a result of regulatory interactions between
different genes through their coded proteins in cellular context. Having immense importance …

CNNGRN: A convolutional neural network-based method for gene regulatory network inference from bulk time-series expression data

Z Gao, J Tang, J Xia, CH Zheng… - IEEE/ACM Transactions …, 2023 - ieeexplore.ieee.org
Gene regulatory networks (GRNs) participate in many biological processes, and
reconstructing them plays an important role in systems biology. Although many advanced …

Application of meta-heuristics on reconstructing gene regulatory network: a bayesian model approach

S Mitra, S Biswas, S Acharyya - IETE Journal of Research, 2023 - Taylor & Francis
Reconstruction of the Gene Regulatory Network (GRN) is important in understanding the
functionalities of a living cell. The reconstruction of GRN is based on microarray gene …

Inferring gene regulatory networks via ensemble path consistency algorithm based on conditional mutual information

J Xu, G Yang, G Liu, H Liu - IEEE/ACM Transactions on …, 2022 - ieeexplore.ieee.org
Utilizing gene expression data to infer gene regulatory networks has received great attention
because gene regulation networks can reveal complex life phenomena by studying the …

GGN: a model-free, data-driven deep learning framework for reconstructing gene regulatory networks

G Mao, K Zuo, Z Pang, J Liu - Proceedings of the 2023 13th International …, 2023 - dl.acm.org
Reconstructing gene regulatory networks based on time-series gene expression data is a
huge challenge in the field of systems biology. However, the accuracy of traditional methods …

[HTML][HTML] 基于回归理论恢复基因调控网络

张雪, 严传魁 - Advances in Applied Mathematics, 2023 - hanspub.org
基因之间的调控关系隐含在基因表达数据里, 需要分析该数据从而揭示基因调控网络的拓扑结构
. 由于静态基因表达数据的样本较少, 因此本文提出基于距离相关性扩充样本数据量的方法 …

Gene expression and protein function: A survey of deep learning methods

S Sathe, S Aggarwal, J Tang - ACM SIGKDD Explorations Newsletter, 2019 - dl.acm.org
Deep learning methods have found increasing interest in recent years because of their wide
applicability for prediction and inference in numerous disciplines such as image recognition …

Inference of gene regulatory network from time series expression data by combining local geometric similarity and multivariate regression

G Chen, ZP Liu - Intelligent Computing Theories and Application: 17th …, 2021 - Springer
Gene regulatory network (GRN) plays a pivotal role in cells. Existing high-throughput
experiments facilitate abundant time-series expression data to reconstruct GRN to gain …

Adaptive elman model of gene regulation network based on time series data

S Cao, Y Wang, Z Tang - Current Bioinformatics, 2019 - ingentaconnect.com
Background: Time series expression data of genes contain relations among different genes,
which are difficult to model precisely. Slime-forming bacteria is one of the three major …