Modern microbiology: Embracing complexity through integration across scales

AM Eren, JF Banfield - Cell, 2024 - cell.com
Microbes were the only form of life on Earth for most of its history, and they still account for
the vast majority of life's diversity. They convert rocks to soil, produce much of the oxygen we …

A systematic analysis of marine lysogens and proviruses

Y Yi, S Liu, Y Hao, Q Sun, X Lei, Y Wang… - Nature …, 2023 - nature.com
Viruses are ubiquitous in the oceans, exhibiting high abundance and diversity. Here, we
systematically analyze existing genomic sequences of marine prokaryotes to compile a …

Life at the borderlands: microbiomes of interfaces critical to One Health

SR Law, F Mathes, AM Paten… - FEMS Microbiology …, 2024 - academic.oup.com
Microbiomes are foundational components of the environment that provide essential
services relating to food security, carbon sequestration, human health, and the overall well …

Prophage-encoded antibiotic resistance genes are enriched in human-impacted environments

H Liao, C Liu, S Zhou, C Liu, DJ Eldridge, C Ai… - Nature …, 2024 - nature.com
The spread of antibiotic resistance genes (ARGs) poses a substantial threat to human
health. Phage-mediated transduction could exacerbate ARG transmission. While several …

Enhanced bacterium–phage symbiosis in attached microbial aggregates on a membrane surface facing elevated hydraulic stress

Y Tan, P Yu, D Huang, MM Yuan, Z Yu… - Environmental …, 2023 - ACS Publications
Phages are increasingly recognized for their importance in microbial aggregates, including
their influence on microbial ecosystem services and biotechnology applications. However …

Marine viruses disperse bidirectionally along the natural water cycle

J Rahlff, SP Esser, J Plewka, ME Heinrichs… - Nature …, 2023 - nature.com
Marine viruses in seawater have frequently been studied, yet their dispersal from neuston
ecosystems at the air-sea interface towards the atmosphere remains a knowledge gap …

Dispersal, habitat filtering, and eco-evolutionary dynamics as drivers of local and global wetland viral biogeography

AM Ter Horst, JD Fudyma, JL Sones… - The ISME …, 2023 - academic.oup.com
Abstract Wetlands store 20–30% of the world's soil carbon, and identifying the microbial
controls on these carbon reserves is essential to predicting feedbacks to climate change …

Decoupling of strain-and intrastrain-level interactions of microbiomes in a sponge holobiont

W Wang, W Song, ME Majzoub, X Feng, B Xu… - Nature …, 2024 - nature.com
Holobionts are highly organized assemblages of eukaryotic hosts, cellular microbial
symbionts, and viruses, whose interactions and evolution involve complex biological …

Unveiling the unknown viral world in groundwater

Z Wu, T Liu, Q Chen, T Chen, J Hu, L Sun… - Nature …, 2024 - nature.com
Viruses as the prevailing biological entities are poorly understood in underground realms.
Here, we establish the first metagenomic Groundwater Virome Catalogue (GWVC) …

Viruses in deep-sea cold seep sediments harbor diverse survival mechanisms and remain genetically conserved within species

Y Peng, Z Lu, D Pan, LD Shi, Z Zhao, Q Liu… - The ISME …, 2023 - academic.oup.com
Deep sea cold seep sediments have been discovered to harbor novel, abundant, and
diverse bacterial and archaeal viruses. However, little is known about viral genetic features …